BAC Information

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BAC

Clone NameMSMg01-355L09
Chromosome17 (Build37)
Map Location 18,024,477 - 18,024,831
singlet/doubletsinglet
Overlap geneFpr-rs2
Upstream geneLOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1
Downstream geneLOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355L09.T7 (MSMg01no355_l09.b1)MSMg01-355L09.TJ (MSMg01no355_l09.g1)
ACCAG466033AG466034
length755768
length of high quality
(start - end)
506 (44 - 549)434 (73 - 506)
definitionCHROMAT_FILE: MSMg01no355_l09.b1 PHD_FILE: MSMg01no355_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:14 2005CHROMAT_FILE: MSMg01no355_l09.g1 PHD_FILE: MSMg01no355_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTCTAGCTCTGAGCCTCATTTTTTAGTGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGAAATCAGTCGCCTA
TCTGATTTAGGATAGGTAAAGATCTTTTCCCAATCTGTTGGTGGCCTTTT
GGTCTTATTGATGGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTA
TTCAGGAATTTTTCCCCTGTACCCATATCATTGAGGCATTTCCCTACTTT
CTCCAGGATCAATATAGTAAAAATGGCCATCTTGCCAAAAGCAATCTACA
GATTCAATGCAATCCCCATCAAAATCCCAACTCAATTCTTCAACGAATTA
GAAAGGGCAATCTGCAAATTCATCTGGAATAACAAAAAAACTAGGATATC
AAAAACTCTGCTCAAGGATAAAAAAACCTCCGGTGGAATCACCATGTCTG
ACCTAAAGCTGTATTACCGAGAAATTGTGATAAAAACTGCATGGTTCTGG
TATAGCGACCGAACAGTATGCCTATGTAATATAACTGCACACCCACAAAT
GAACCCCTACTTCTAAGGTTCCTTGACCCTTGTACTACGCCCCCTAATTC
TCTCTTTACAAAATACATTGCCCGCTCTACCTTTGGCGCTGCCTCATCTG
TTTTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCCGTTCCTGTGGTGTAAATGAAGTAC
TTGGCTCTCACTATAGACTTAAGGAAACTCTGAGAGGAACAAGAAAACTG
AAACCAACCTTGTTGAAGAAACTCTTGGTTTCCTAAGATTCCCAGAAGCC
AGGCAAATGGGATGCTATTGGAATCCTTTTATTTCATTGTATTTTTTATA
TGGACATTTTTCTTAAAGTTGTGTGTGTATAACATACATGTCTGGTGTCC
TCAGAAGCCAAAAGATAACACTGGATCCCTAGGAACTGGAGTTACAGGTA
GTTGTGAGAAACAATGTGGGTGCTGGTAATTGAACCTAGATTTCTGGAAG
AACAGCCAGTGCTCTTAAATTCTAAGCCATCTCTCCAGCCCAAGTGGAGT
TTTTATAATCATAGTGTAAATGTTCTTCTACCATTGATCTGTGGAAAACG
TGAGTTCAGTCCTGTCAATTTTTGGCCCTAGCATCTGTGCTCTGGTTCAT
TGAATTTGGTTCTGATTTGACTTTACAAAATGCTGTGAACAGTCTGACAT
GTGCTTTGGCAGCAAAATTCAGTTCTTTTAAGCAGAGTTATTCCCATTCT
TAACCCCTGAGAAACACCCTCCCAACCTTTTACTCTTTTTTCTAATATGG
GAAGGAGTGGCGGCCCACAAAGAGGCTTTTGAAATATAAAACACGGATGG
TCTTTCCCAAGACACCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_l09.g1 MSMg01no355_l09.g1 CHROMAT_FILE:
MSMg01no355_l09.g1 PHD_FILE: MSMg01no355_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:14 2005
         (434 letters)



>mm_chr17_18024477_18025310
          Length = 834

 Score =  671 bits (347), Expect = 0.0
 Identities = 353/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gttcctgtggtgtaaatgaagtacttggctctcactatagacttaaggaaactctgagag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gttcctgtggtgtaaatgaagtacttggctctcactatagacttaaggaaactctgagag 296

                                                                       
Query: 65  gaacaagaaaactgaaaccaaccttgttgaagaaactcttggtttcctaagattcccaga 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 295 gaacaagaaaactgaaaccaaccttgttgtagaaactcttggtttcctaagattcccaga 236

                                                                       
Query: 125 agccaggcaaatgggatgctattggaatccttttatttcattgtattttttatatggaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 agccaggcaaatgggatgctattggaatccttttatttcattgtattttttatatggaca 176

                                                                       
Query: 185 tttttcttaaagttgtgtgtgtataacatacatgtctggtgtcctcagaagccaaaagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tttttcttaaagttgtgtgtgtataacatacatgtctggtgtcctcagaagccaaaagat 116

                                                                       
Query: 245 aacactggatccctaggaactggagttacaggtagttgtgagaaacaatgtgggtgctgg 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 115 aacactggatccctaggaactggagttacaggtagttgtgagaaacaaggtgggtgctgg 56

                                                                  
Query: 305 taattgaacctagatttctggaagaacagccagtgctcttaaattctaagccatc 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  taattgaacctagatttctggaagaacagccagtgctcttaaattctaagccatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)