BAC Information

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BAC

Clone NameMSMg01-355N15
Chromosome17 (Build37)
Map Location 83,073,530 - 83,073,794
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc8a1, EG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
Downstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355N15.T7 (MSMg01no355_n15.b1)MSMg01-355N15.TJ (MSMg01no355_n15.g1)
ACCAG466140AG466141
length765783
length of high quality
(start - end)
274 (47 - 320)130 (77 - 206)
definitionCHROMAT_FILE: MSMg01no355_n15.b1 PHD_FILE: MSMg01no355_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:24 2005CHROMAT_FILE: MSMg01no355_n15.g1 PHD_FILE: MSMg01no355_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTAAATTTCCGTTTAAAACGTAGGGCATAATCACTGTACAAACT
AGAAGCCAGTCTTTGGAGACACAAGGTAGGTTACCTTCTGTGATAGACAA
CTTTCTGTGTCCTGATGTCAGGATACTTCAAGTCCAAATTTCCATATATC
CAGAAGGCCCTGAAGCAATATACAGATGTTTGCTAATTTTAGAGGAGAGG
GTTCCAACCATTCATTATTTAATCTTGTGCCTGTCTTAGTCTCCCCCCCC
CCGCACCCCCCCCCCAGTTTTTTTGATAGGAGGGAAGCTCCCAAAATCCA
CTGCATGAACGAACAAGTATCCCTTGGAAATAAGGTCTTCTTTTTCTCTT
TATCTGAGTTTTTTTAGACCTTCTCTCTCTGCATGGATAGGAAGCTTCTT
ATTCACTGGGAAAGGATAATCTGCAGTCAGATTTTGCAACACTATCCAGA
CAACCAAGTCAAGGTCCACCCAGCTTATTCTTCCCTCCACCCACGCTAAT
AGGTTGAAAGGCCCGTTACTATGGATTCTGATGTCACTGTATTAATGACT
TTGTCTTATTTTTGGATCCCAATTTGTACCTTGCCATCTACTCATCATAT
CCTCCTTTTTTCTCTCTTCTTTCTCCACCATTTTTTTTCCTTCCTTTCTT
TTTCTCATCTTCTTGTTTGCTTTATCACCCTGATCGCTTTATTCCTGTTC
TCTACCCTTTATTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTATACTCAAATGCACTAGC
TTCAAGACATTTTTCTTATAATTTATTTATTTTTTATTTACAGGCCCCTC
CCTTCTCTCCTCCCAGTCTTGCCTTTATAGATCCACCTCCCCCATTACCT
TCTCCTTGGNTCNTCTCGCTCACAGGGGGGGGGGGGCGTGAGGGGTGGGC
GGGGGGCGAGGGAGATGGGGTANGGATACCCAATTTGTTTAGCTAAAAAG
GTCAAATTTCCCCCCAAAATTTTAAAAAGGGCACACCCCGTTCCCCTTTA
AAAAAGCGCCCCAAAATAAAAAAAATTCTTTCTCTTTTATAACCCCTTTT
CCCGCCCCCCCCCCCCCCTCCCCCCTTTCCCTCTTCCTCCCCCTTCCCCC
TCCCCCCCCCCCCNCNCNCCCCCNTTNCCTCTCCTCCCCCCCCTCCTCCC
CCTCCCCCCCTTTTCCTTTCCNGGGCTTTCTCCCTTCCCCCTCCCCCCCT
CCCATACTTCCCNCCCTCCACAACCACATTTCCCTTTCCCTCTTCTTTCC
CTTTTTTTTCCCCCCCCCTTAATTCCTACCTTTTCTCTTTATTTAACTCT
CTCCCCTTTTTCCCCCTTTTTTTCCTTTTTCCCCTCTCTCCCCTCTCCCC
CTCCTCCCCCCCCCCTTTTCTCTCCCCTCCCCCCTTTCTTCTTCCCCCTC
TCCTTTACTTCTAACATTATCCCCTAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_n15.b1 MSMg01no355_n15.b1 CHROMAT_FILE:
MSMg01no355_n15.b1 PHD_FILE: MSMg01no355_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:24 2005
         (274 letters)



>mm_chr17_83073326_83073997
          Length = 672

 Score =  472 bits (244), Expect = e-137
 Identities = 261/268 (97%), Gaps = 4/268 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaatttccgtttaaaacgtagggcataatcactgtacaaactagaagccagt 64
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaattcctaaacagccgtttaaaacgtagggcataatcactgtacaaactagaagccagt 410

                                                                       
Query: 65  ctttggagacacaaggtaggttaccttctgtgatagacaactttctgtgtcctgatgtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctttggagacacaaggtaggttaccttctgtgatagacaactttctgtgtcctgatgtca 350

                                                                       
Query: 125 ggatacttcaagtccaaatttccatatatccagaaggccctgaagcaatatacagatgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggatacttcaagtccaaatttccatatatccagaaggccctgaagcaatatacagatgtt 290

                                                                       
Query: 185 tgctaattttagaggagagggttccaaccattcattatttaatcttgtgcctgtcttagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgctaattttagaggagagggttccaaccattcattatttaatcttgtgcctgtcttagt 230

                                       
Query: 245 ctccccccc-cccgcaccccccccccag 271
           ||||||||| |||   ||||||||||||
Sbjct: 229 ctcccccccgccc---ccccccccccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 672
Length adjustment: 9
Effective length of query: 265
Effective length of database: 663
Effective search space:   175695
Effective search space used:   175695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)