BAC Information

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BAC

Clone NameMSMg01-356F15
Chromosome17 (Build37)
Map Location 48,655,727 - 48,656,197
singlet/doubletsinglet
Overlap genenone
Upstream geneCcnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
Downstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356F15.T7 (MSMg01no356_f15.b1)MSMg01-356F15.TJ (MSMg01no356_f15.g1)
ACCAG466514AG466515
length752773
length of high quality
(start - end)		451 (36 - 486)576 (66 - 641)
definitionCHROMAT_FILE: MSMg01no356_f15.b1 PHD_FILE: MSMg01no356_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:03 2005CHROMAT_FILE: MSMg01no356_f15.g1 PHD_FILE: MSMg01no356_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCT
GATTCTCGCTTGTGATCTTAGAGAACTGAGGTCTGTTTTGGATCATTTGC
CCTCTCTCCCCACTTTTAACAGATATAATGACAATATCATCAACTCATCA
TTTAAAAACCTATAATTTGGGCTGGGAGATAGATCAGTTGCATAAGTGCT
TGCCTTATGAGTTCAATCTCTTATGTAACAACCAATCAACCAAAACCAAA
CCAAACAAGTGACCCCAGGTATGATGGCATGCACTTTTAATCCCAAAGCT
GGGGGTCAGAAACGGATAAGTGTCTGCCGCTTGCTGATCAGCCTCCCAGT
CTGTTGAGCTCATGGCCCAAAGAAACCATTTCTTAAAAAAAAAAAGATGG
ACAGAGCCTAGGGAATGACAGAGTTGTTTTCTGGCCTTTAAACTCTAGAA
CACACACACACACACACACACACACACACACACACACAAAAGGGCATATC
TAATCTACTGTCTTTTAAAATGTATCTTATTTTTGTTTTGCACATAAGTA
GTTTTGCCTTCTTGTATGTGTTTCCAGGGCCCATGGGAACCAGAAGAGGG
CGTCAGATCCACGACATCTGGAGCTTTAGGTGATTCTGAGGCCCTGTGTA
TGTTGGGAACTGACCTGGGTCCCTTGCAACCCCCAAGTGTCCTTAACCCT
GAGCTTCCTCTCTAATCCCCGAACTAAAATTTTTTTTACTAAACATAATG
GT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTATGAGGCAACCCACAGCCACCACACTCTCCTA
AGATCCAGAGGCACCAACATAAACCAAGGAACAGAACATCTACCCTGCAA
AGACATGACCAGGTATCAGCATCTAGAACTACAATCATCCCAAACCCAGA
TGCCTAGACATCAGAATTAAAACACAGTCAATAAAAGCTGGAACAAAATG
CCCTCACTAGAGCCCAACATCCCTACTACATTAGAACATGAGGATCACAA
TACAGCTGAGTCACAAGACAAGGACTCCAAAATAGCCTTTATGACTATAT
TAGAGGCCCGTAAAGAAAAAAATTAATAAATTCATTAACTAAATCCACAA
AAATGCAAACAAATGGTGGAGTGAAATGAAGGAAACAGTTCAAGACTTGC
AAGTGGGAATGGAATTAATATAGAAAACCCAAACTGGGGAGAAATGGAAA
TGAAAAATTTCTGAACTTGAACAGGAATCTCAGAGGTAAGCCTTACCAGC
AGAAACACAAGAGAGGGAAGAAAGAATGTCAGGTGTTGAAGACAAGACAG
AAGAAATGGATACCCTGGTCAAAGTCAATATGAAACATGAAAGAATCCAG
GCACAAAATATCAATAAAACCAAAGACACTGTGAACAGACCACATCTACA
AATAGTAGGAATAGAAGAAGGGGAGGAAACCCCGTCCTAGACACAGAAAA
ATTTTCTACAAATCGTAGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_f15.b1 MSMg01no356_f15.b1 CHROMAT_FILE:
MSMg01no356_f15.b1 PHD_FILE: MSMg01no356_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:03 2005
         (451 letters)



>mm_chr17_48655524_48656373
          Length = 850

 Score =  754 bits (390), Expect = 0.0
 Identities = 441/472 (93%), Gaps = 25/472 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttctgattctcgcttgtgatcttagagaactgaggtctgttttggatcattt 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttctgattct-gcttgtgatcttagagaactgaggtctgttttggatcattt 262

                                                                       
Query: 64  gccctctctccccacttttaacagatataatgacaatatcatcaactcatcatttaaaaa 123
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 gccctctctccccccttttaacagatataatgataatatcatcaactcatcatttaaaaa 322

                                                                       
Query: 124 cctataatttgggctgggagatagatcagttgcataagtgcttgccttatgagttcaatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cctataatttgggctgggagatagatcagttgcataagtgcttgccttatgagttcaatc 382

                                                                       
Query: 184 tcttatgtaacaaccaatcaaccaaaaccaaaccaaacaagtgaccccaggtatgatggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcttatgtaacaaccaatcaaccaaaaccaaaccaaacaagtgaccccaggtatgatggc 442

                                                                       
Query: 244 atgcacttttaatcccaaagctgggggtcagaaacggataagtgtctgccgcttgctgat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 443 atgcacttttaatcccaaagctgggggtcagaaacggataagtgtctgcagcttgctgat 502

                                                                       
Query: 304 --cagcctcccagtctgttgagctcatggcccaaagaaaccatttcttaaaaaaaaaaa- 360
             ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| 
Sbjct: 503 atcagcctcccagtctgttgagctcatggccaaaagaaaccatttctaaaaaaaaaaaaa 562

                                                                       
Query: 361 -----------------gatggacagagcctagggaatgacagagttgttttctggcctt 403
                            |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 563 aaaaaaaaaaaaaaaaagatggacagagcctagggaatgacagagttgttttctggcctc 622

                                                               
Query: 404 taaactctagaacacacacacacacacacacac----acacacacacacaca 451
           |||||||||||||||||||||||||||||||||    |||||||||||||||
Sbjct: 623 taaactctagaacacacacacacacacacacacgcgcacacacacacacaca 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 850
Length adjustment: 10
Effective length of query: 441
Effective length of database: 840
Effective search space:   370440
Effective search space used:   370440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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