BAC Information

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BAC

Clone NameMSMg01-357F17
Chromosome17 (Build37)
Map Location 22,555,150 - 22,555,706
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758
Downstream gene1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357F17.T7 (MSMg01no357_f17.b1)MSMg01-357F17.TJ (MSMg01no357_f17.g1)
ACCAG467279AG467280
length751767
length of high quality
(start - end)		557 (63 - 619)450 (74 - 523)
definitionCHROMAT_FILE: MSMg01no357_f17.b1 PHD_FILE: MSMg01no357_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:19 2005CHROMAT_FILE: MSMg01no357_f17.g1 PHD_FILE: MSMg01no357_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATCATTG
TCTTTCATAAACAAAAGGGGCAGGACCTAATTCTCAGGAATAGAAATGGG
ATCTCTCCTCTCTTAATGGCTCCATGAGAAGACCAGGGGAAGTCCTAGCA
GCAACACGGACTTTGACAGAACTGTAGATGAGACTGTGAAATGCAGCAAA
CCCAAAAGCTCCCAGCGAATACACCACATGCAGTCTAATTGCCTCAGAGA
ATATGCATAGCCTTCAGGACCTTCGAAGCTCAGCTGCAAATGATTGCACT
GGAGTGAGTGTTACAGTGAGAGTGTCCCTCAAGTGTTTGATTTCAATGCA
CTTCACATATGAACAACTAGGAATAGTTTGTTGAGTGTGACTTAAGACAT
AATTAACACACAACCAACTGATTTTAATAATGCAAATGGAAGCCAATTCC
TGTTAGCTGATCATAAACTATTTAGAGTGGAAACATGTCCTTTCTATACC
ACACCTTACCGATTAGTAAGGAAGGTTGAGATCTGGGTCATGTGGTTATA
CCTTAGAATAAGAAGAACATGGCAATTGATACAATTAATTTTCCTCTCAT
AGCATACTTCTTTGTCGATAAGATGCTAGATAACAGCATTATCCTGTATT
ATAAATTGTTCTACACTTATTGTGGGTGCACATAAAATTTACTGCTATGT
ACCTAACTACAACACCAATATAATCCTCTTTTTGCACATTACAATTGGGA
G

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGATGTTTTCTAAGGTCACCAACTT
GAATGAAGCATTTCTCACATTCACTACATTTGTAAGGTTTCTTGCCTGTA
TGATACACTTGATGAATGATAAGACTGCATTTTAGAGTAAAGCCTTTGTC
ACATTCACTACATTTGTACGGCTTCTCTCCTGTATGAATTCTCTGATGAG
TTCTAAGGTTGGTTTTGGAGCTAAAGCATTTTTCACATTCATTACATTTG
TAAGGTTTCTCTCCTGTATGAATTCTCTGATGTCTTCTAAGATCACCAAC
TTGAATGAAGCATTTCTCACATTCACTACATTTGTAAGGTTTCTTGCCTG
TATGATACATCTGATGAATACTAAGACTGCCTTTGTGGGAAAAGCATTTG
TCACATTCACTACATTTGTAAGGATTCTCTCCTGTATGAATTCTCTGATG
AGTTCTAAGGCTGCTTTTGTAGCTAAAGCATTTTTCACATTCATTACATT
TTGTAAGGTTTCTCTCCTTTATGAATTCTCTGATGTTTTCTAAGATCACC
CAACTGAATGAAACATTTTCTCACATTCCCTACTTTTGTAAAGGTTCCTT
TTCACTTTTGGTTTGGTTTCAAATGAAAGGGTTCTTTAAAAAGCCAAAAC
CTTTAAAAACTTTGGCCCCATGGATTTCTTCTTTTCCTAATAAGTCCCCC
GGTTTTAAACAAAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_f17.b1 MSMg01no357_f17.b1 CHROMAT_FILE:
MSMg01no357_f17.b1 PHD_FILE: MSMg01no357_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:19 2005
         (557 letters)



>mm_chr17_22554950_22555906
          Length = 957

 Score = 1062 bits (549), Expect = 0.0
 Identities = 555/557 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaggggcaggacctaattctcaggaatagaaatgggatctctcctctcttaatggctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aaaaggggcaggacctaattctcaggaatagaaatgggatctctcctctcttaatggctc 698

                                                                       
Query: 61  catgagaagaccaggggaagtcctagcagcaacacggactttgacagaactgtagatgag 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 catgagaagatcaggggaagtcctagcagcaacacggactttgacagaactgtagatgag 638

                                                                       
Query: 121 actgtgaaatgcagcaaacccaaaagctcccagcgaatacaccacatgcagtctaattgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 actgtgaaatgcagcaaacccaaaagctcccagcgaatacaccacatgcagtctaattgc 578

                                                                       
Query: 181 ctcagagaatatgcatagccttcaggaccttcgaagctcagctgcaaatgattgcactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctcagagaatatgcatagccttcaggaccttcgaagctcagctgcaaatgattgcactgg 518

                                                                       
Query: 241 agtgagtgttacagtgagagtgtccctcaagtgtttgatttcaatgcacttcacatatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agtgagtgttacagtgagagtgtccctcaagtgtttgatttcaatgcacttcacatatga 458

                                                                       
Query: 301 acaactaggaatagtttgttgagtgtgacttaagacataattaacacacaaccaactgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 acaactaggaatagtttgttgagtgtgacttaagacataattaacacacaaccaactgat 398

                                                                       
Query: 361 tttaataatgcaaatggaagccaattcctgttagctgatcataaactatttagagtggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tttaataatgcaaatggaagccaattcctgttagctgatcataaactatttagagtggaa 338

                                                                       
Query: 421 acatgtcctttctataccacaccttaccgattagtaaggaaggttgagatctgggtcatg 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 acatgtcctttctatatcacaccttaccgattagtaaggaaggttgagatctgggtcatg 278

                                                                       
Query: 481 tggttataccttagaataagaagaacatggcaattgatacaattaattttcctctcatag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tggttataccttagaataagaagaacatggcaattgatacaattaattttcctctcatag 218

                            
Query: 541 catacttctttgtcgat 557
           |||||||||||||||||
Sbjct: 217 catacttctttgtcgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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