BAC Information

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BAC

Clone NameMSMg01-357I06
Chromosome17 (Build37)
Map Location 39,179,575 - 39,180,038
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985, LOC100043297
Downstream geneLOC100043300, EG668200, LOC672857, LOC627695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357I06.T7 (MSMg01no357_i06.b1)MSMg01-357I06.TJ (MSMg01no357_i06.g1)
ACCAG467398AG467399
length739762
length of high quality
(start - end)		462 (45 - 506)400 (74 - 473)
definitionCHROMAT_FILE: MSMg01no357_i06.b1 PHD_FILE: MSMg01no357_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:32 2005CHROMAT_FILE: MSMg01no357_i06.g1 PHD_FILE: MSMg01no357_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTGAGTGTTTGTCAGAACCTAAAGTAGAAATGTTTTGTTTGTT
TGTTTGTTTGTTTGTTTGTTTTGTTTTTTAACCCCAAACATCCATAGCTG
GAAACATAAGTTCTATTCACTAGCATTAGTTCAGGTTACAAAGGGGCAAT
CTGAATTGAATAAATGCTGAATCCTAGACTTTCTATAGATTGTTGTTACA
ACATAGCAATTTCATTCATAGGGAGACTTTCATGTTTCCAGGCATTCTTC
ATTCAGAAGTAAATTAAGACTACTTACCACAATATTGACCTACTTCCAGG
GTTTTTCAATACAGACATTTTAAGTAGGCAGACTATCATTATCCATTCTT
GGCATCTTGGAATTAACTCTTTCTTCATATCTTTACATTTCAAGTGTCCA
ATAGTTTTTTATCTTTGTTATTTTACATAGCCACCCTTGATAAAACAAAA
CAAAACAAAAACAAAACAAAAAACAAATACTGATAACACATATGACTTTA
ACCATGCTTCTCCAGGACTCTGAAGAGTGGACTAATGCTCGTATGCTGCC
AATTATCATACACTCTTGTTACAACGTCCGCTTTCATGTTCAAAAAAAAA
ATCTCCGAAATATACTCCACCCTATTTTACTCATCTTTTCTAATGAAAGA
TTGCCTACAACGCGACTTCCCCCTCCCTTTTTCACAATC

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGAAATTACTTCTTTATTTCTTCCCT
GACTAAGTCATCATTGATTAGATAGTTGTTCGGTTTCTATGACTATGTGG
GCTTTCTGTTGTTTTTGCTGTTATTCGAGTCCACTCTTAGACCATGGTGA
TCTAAAAGAATGCATGGGATTATCTCAGTCTTCTTTTATCTGTAGAGGCT
TGTTTTGTGTTTGATTATATGGTCAATTTTGGAGAAGGTTCCAAGAGATG
CTGAAAGAAGATATATTCTCTTGTTTCGGGGTAAAATTTTCTGTAAATAT
CTGTCAAATGTATTTGGTTTATAAATTCTGTTAATTTCACTGTGTTTCTG
TTCTATGTCTGTTTCAATCACCTGTCCATTGGTATGATTGGGGCACTGAA
GTTTCCCATTATTATTGTGTGAGGTTCACTGTGTGTTTTGAGCTTCAGAA
ATTTTTTGCGGCCCGTGGTCGTATTCTCTGTTACTTTGATTCTCCGTTAC
CGTCTGCCCTATTCCGGTTGCTTTCCGTGTTTTTTTTATTCGTATTTTCC
TCTTTTCGCTACGTTCCCTCGATCCCCCGTTCCCTCCTTCTCCGATTTTG
TTCTCTTTCGATTTCGTTTATTGTTTTTGTTTTTCGATCGGTTTTCGCTT
TTTTTCCCCTCGCGTCTCGTTTCCGTGTTTTCTCGTATTCCGACTTTTTT
TCGTTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_i06.b1 MSMg01no357_i06.b1 CHROMAT_FILE:
MSMg01no357_i06.b1 PHD_FILE: MSMg01no357_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:32 2005
         (462 letters)



>mm_chr17_39179377_39180238
          Length = 862

 Score =  870 bits (450), Expect = 0.0
 Identities = 459/464 (98%), Gaps = 5/464 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttctgagtgtttgtcagaacctaaagtagaaatgttttgtttgtttgtttgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggaattctttctgagtgtttgtcagaacctaaagtagaaatgttttgtttgtttgtttgt 258

                                                                       
Query: 64  ttgtttgtttgttttgt----tttt-taaccccaaacatccatagctggaaacataagtt 118
           |||||||||||||||||    |||| ||||||||||||||||||||||||||||||||||
Sbjct: 259 ttgtttgtttgttttgttttgttttgtaaccccaaacatccatagctggaaacataagtt 318

                                                                       
Query: 119 ctattcactagcattagttcaggttacaaaggggcaatctgaattgaataaatgctgaat 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctattcactagcattagttcaggttacaaaggggcaatctgaattgaataaatgctgaat 378

                                                                       
Query: 179 cctagactttctatagattgttgttacaacatagcaatttcattcatagggagactttca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctagactttctatagattgttgttacaacatagcaatttcattcatagggagactttca 438

                                                                       
Query: 239 tgtttccaggcattcttcattcagaagtaaattaagactacttaccacaatattgaccta 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtttccaggcattcttcattcagaagtaaattaagactacttaccacaatattgaccta 498

                                                                       
Query: 299 cttccagggtttttcaatacagacattttaagtaggcagactatcattatccattcttgg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttccagggtttttcaatacagacattttaagtaggcagactatcattatccattcttgg 558

                                                                       
Query: 359 catcttggaattaactctttcttcatatctttacatttcaagtgtccaatagttttttat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 catcttggaattaactctttcttcatatctttacatttcaagtgtccaatagttttttat 618

                                                       
Query: 419 ctttgttattttacatagccacccttgataaaacaaaacaaaac 462
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctttgttattttacatagccacccttgataaaacaaaacaaaac 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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