BAC Information

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BAC

Clone NameMSMg01-358K23
Chromosome17 (Build37)
Map Location 47,291,422 - 47,291,761
singlet/doubletsinglet
Overlap genenone
Upstream geneGtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358K23.T7 (MSMg01no358_k23.b1)MSMg01-358K23.TJ (MSMg01no358_k23.g1)
ACCAG468282AG468283
length742746
length of high quality
(start - end)		448 (46 - 493)401 (68 - 468)
definitionCHROMAT_FILE: MSMg01no358_k23.b1 PHD_FILE: MSMg01no358_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:01 2005CHROMAT_FILE: MSMg01no358_k23.g1 PHD_FILE: MSMg01no358_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGGCGCTATACGATTCACTATATGTCGAGGATCCGCGGAATTCC
CTAAACACAGGCACATGACTCGACTCCATTTCCCCACAGACCCTCCTAAC
TTTAAACCTCTTAGTAACACCCTTGTAGTCAACGGGGCTAAGACCAACGT
CTTGCCATAGCTTCAGGTCCTCCCAGCCCAATCCCCACCTTAGAAAAAGA
AGGATTTTATTTTAATTATATTTGTAGACACCTGACCGAAGGTGTCCAAA
AAGGCCAGAGGATGGTTTCACATCCCCTGAAGCTGGAGTTACAGGTGGTT
GGTGAACCAGCCAATGTGAGTGCTGGGAACCAAACCCAGGCCAGCCCTCT
GCAAGGGCAGAACACACTCTCGACCCCCTGGACTATTTTTCCGGCCCCCT
TGCTCTTGCCACGGAGACTTTATATGTACCAGGACTCAAGCTGTGTGCTG
GAACACAGGGATAAGACATCGCTTGTGTCCTTCTGAAGCTAAGAGTCCTA
TAGCAAAGACAGACCCAACAAGGGATGACTGATCTAGGCAGACAGAAGAA
AACCACCTGCCCCTCCAGGGAAGCATCTGAAATACTGTAGGTGGAAATAA
GCCTGTCCGGAAGTGAAAAATCCCCCCCCCCCCGGGCAGACAAGGCAAGG
TCCCTTAATTCCAGGCCCACCTTTACCCCCCCAAATTCTTGTAAAATTAA
AAAGTTTGGTCCCCGTTTTGTTCCCCGTTTGTCCCCCGTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCGAACTCAGAA
ATCTGACTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCATCATC
ACGCTTGGCTATCGTCCCACCTTTCTATGCTGACCTCTGCTCCCGTTCGG
GAGAGAACCCAGGGCTTTGCCCAGCTCATGCACATCTACTACCCAGCTAC
ACTTCCTAAAAACAAAACTAAAATCCCACAATGGGAAAACTATCTTCTCC
CCTTTACCGTTATATATTTAGGCTTTAAAATGAGGTCTGGTTTGGAGGTT
CTAGCAAGGGGGTCAGCTCCTGGCATACCCTCAAGACCGGTCGTACATTT
GGGGAGGTCTCTGTTCTCAACCGAGCGTGTAGCTTGAGGAGGGAACCCAA
ACAGAACCGTGAGGGAGAAGGGGAAAGCCACCTGGGCACAGATCAGCTAA
ACCAAGCTGGGATCAACGGGGTGACAGACATTGGAGCCAGCTTGCCCCCA
CATCCATTAAGGGTTAAATGGGACCAAATTTTTATAAAAGGCATAATGGG
GCGGGGGGGGCCCTTTGAAGGTTACTGACCCTGGATCCATGGGCCCCTAG
GGAAATTTCCCACCAAAACCCCCTGCTTTTTAAACCAGGGGGGGGCATTT
GTCCAACCCCTCTAAATTTCTTTAAAACAAAAAAAAATAATTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_k23.b1 MSMg01no358_k23.b1 CHROMAT_FILE:
MSMg01no358_k23.b1 PHD_FILE: MSMg01no358_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:01 2005
         (448 letters)



>mm_chr17_47291422_47292269
          Length = 848

 Score =  530 bits (274), Expect = e-155
 Identities = 319/342 (93%), Gaps = 15/342 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccctaaacacaggcacatgactcgactccatttccccacagaccctcctaactttaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct: 340 attccctaaacacaggcacacgactcgactccatttccccacagaccctccaaacttcaa 281

                                                                       
Query: 61  acctcttagtaacacccttgtagtcaacggggctaagaccaacgtcttgccatagcttca 120
           ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 280 acctcttagtaacacccttgtagccaacggggctaagaccaacgtcctgccatagcttca 221

                                                                       
Query: 121 ggtcctcccagcccaatcccca--------ccttag-----aaaaagaaggattttattt 167
           |||||||||||||||||||| |        ||  ||     |||||||||||||||||||
Sbjct: 220 ggtcctcccagcccaatcccaataaaaagccc--agccaataaaaagaaggattttattt 163

                                                                       
Query: 168 taattatatttgtagacacctgaccgaaggtgtccaaaaaggccagaggatggtttcaca 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 taattatatttgtagacacctgaccgaaggtgtccaaaaaggccagaggatggtttcaca 103

                                                                       
Query: 228 tcccctgaagctggagttacaggtggttggtgaaccagccaatgtgagtgctgggaacca 287
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 102 tcccctgaagctggagttacaggtggttggtgaaccagccaatgtgagtgctggaaacca 43

                                                     
Query: 288 aacccaggccagccctctgcaagggcagaacacactctcgac 329
           ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 42  aacccaggccagccctctgaaagggcagaacacactctcgac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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