BAC Information

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BAC

Clone NameMSMg01-359J20
Chromosome17 (Build37)
Map Location 34,580,775 - 34,581,212
singlet/doubletsinglet
Overlap geneBC051142
Upstream geneLOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442
Downstream geneEG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359J20.T7 (MSMg01no359_j20.b1)MSMg01-359J20.TJ (MSMg01no359_j20.g1)
ACCAG468987AG468988
length781769
length of high quality
(start - end)
469 (22 - 490)438 (51 - 488)
definitionCHROMAT_FILE: MSMg01no359_j20.b1 PHD_FILE: MSMg01no359_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:08 2005CHROMAT_FILE: MSMg01no359_j20.g1 PHD_FILE: MSMg01no359_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATTCCGAGAGGATCCGCGGAATTCCTTTACTTTCCAAACACC
CAGAGATTGGCCCATAATAGTTCTTGATTTAAAATATTAAAATTTATTAT
TATCTATTCTCTTGCAAGTACAAGACAGGGAAAATTTTGCTTTAATTGTG
CCCATGTATAGTAATACTAAACCTGTGAAAAGATATCTGTACTGGCTAGT
TTTGTGTCAACTTGACACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAG
TTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAG
TGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACTATCTCTGGGCTGGTA
GTCTTGGTTTTATAAGAGAGCAGGCTGAGCAAGCCATGAGAGGCAAGCCA
GTAAAGAACATCTCTCTATGGCCTCTGCATCAGCTCCTGCTCCCTGACCT
GCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTATGGAAG
TGTAACCCAAATAAACCCTTTCCTCCCCAACTTGCTTTCTGGTCATGAAG
TTTGCGCCCGAATATAAACCCTGACTAACACAAAATCAGCGTAATGGTTC
CCCTCCCAAAAAGTCTAATTTTCCCATGGTACGTCATATTTTTTGCCCCC
ACTCGTTTTAAATTATTTTTTAATTATTCCCCCCTTTCCCTCTTCTTTAT
TCCATTGTTCTTATCATTTTTTTACTTTTTCTTCCTTATTTTTATTTCCC
GCTCTCCTCTATTCTCTCATATTTCCCTCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTAGCAAGCACAAAGCGGGAAGCACAGCAACACATTTAAACCATCATACT
GTGGTAACAAAAACCACCAAGAGGAGCAACAGGCCAGGCCATCTGAACAT
TATGCAAGGGCAAGGAACACCAGAGAGAAAAACAAAACAAAACAAAACAA
AACAAGACCCCAAACAACAATAACAATAACAACAACAAAACAACCCATAA
GGGACTTACCACTGGAATCCATACATTGTACTGTAAATAGATACAAATGA
TTGTGATTAGACAGAAAGAAGGCAAACTGTTTTCCAAAGGAGTGTGCAGA
TAGCAGCCTTTCTAGGCGGCACTGACTCCAACAGTAAGCATCAATCGTCC
CCATGACACCCAGCCTTTCTGTAGACTTAGCTAGAAGCAGGGGCTGCCTC
TTCATTCTTGCTTTTTGTGTAGGTACTACAGGTGAGATCCTTAGGGGTAG
CCTTTCCTTGCCTTCTTCCACCCCCATCCTATCAGGCACATGTGCATCTC
TTCGACAGCCCCCTTTTATATCTGTGGCCACCCTTTAAGCTTTCCCTCAT
CCGCTTCACCATTTTGTTTGGCTTGGAAACCCCCCCAATGCTCGACATAT
TCTTTACCTCGTAACAAATTGACTGCCGGCTGCTCTAAGCTAAATCTAAT
GCCCGCGGAACCCACATTTTTACCAAATGAAAATTCCCTTTCGGAACCCG
CTCTTTCTTTACCTACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_j20.g1 MSMg01no359_j20.g1 CHROMAT_FILE:
MSMg01no359_j20.g1 PHD_FILE: MSMg01no359_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:08 2005
         (438 letters)



>mm_chr17_34580382_34581219
          Length = 838

 Score =  839 bits (434), Expect = 0.0
 Identities = 437/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagcaagcacaaagcgggaagcacagcaacacatttaaaccatcatactgtggtaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ttagcaagcacaaagcgggaagcacagcaacacatttaaaccatcatactgtggtaacaa 772

                                                                       
Query: 61  aaaccaccaagaggagcaacaggccaggccatctgaacattatgcaagggcaaggaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aaaccaccaagaggagcaacaggccaggccatctgaacattatgcaagggcaaggaacac 712

                                                                       
Query: 121 cagagagaaaaacaaaacaaaacaaaacaaaacaagaccccaaacaacaataacaataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 cagagagaaaaacaaaacaaaacaaaacaaaacaagaccccaaacaacaataacaataac 652

                                                                       
Query: 181 aacaacaaaacaacccataagggacttaccactggaatccatacattgtactgtaaatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aacaacaaaacaacccataagggacttaccactggaatccatacattgtactgtaaatag 592

                                                                       
Query: 241 atacaaatgattgtgattagacagaaagaaggcaaactgttttccaaaggagtgtgcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atacaaatgattgtgattagacagaaagaaggcaaactgttttccaaaggagtgtgcaga 532

                                                                       
Query: 301 tagcagcctttctaggcggcactgactccaacagtaagcatcaatcgtccccatgacacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tagcagcctttctaggcggcactgactccaacagtaagcatcaatcgtccccatgacacc 472

                                                                       
Query: 361 cagcctttctgtagacttagctagaagcaggggctgcctcttcattcttgctttttgtgt 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 471 cagcctttctgtagacttagctagaagcaggggctgcctcctcattcttgctttttgtgt 412

                             
Query: 421 aggtactacaggtgagat 438
           ||||||||||||||||||
Sbjct: 411 aggtactacaggtgagat 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)