Query= MSMg01no360_f14.b1 MSMg01no360_f14.b1 CHROMAT_FILE:
MSMg01no360_f14.b1 PHD_FILE: MSMg01no360_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:04 2005
(538 letters)
>mm_chr17_77216874_77217811
Length = 938
Score = 998 bits (516), Expect = 0.0
Identities = 529/536 (98%), Gaps = 6/536 (1%)
Strand = Plus / Plus
Query: 6 gaattctacactgttcc---tatgaaaatcatacttcattttgaatgatttttagcacat 62
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctacactg---caaatatgaaaatcatacttcattttgaatgatttttagcacat 262
Query: 63 ttaatcatcaagaactgactgaggagatataaatgagaaatccttgtaaacaactccatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttaatcatcaagaactgactgaggagatataaatgagaaatccttgtaaacaactccatg 322
Query: 123 taccttgggcttgaccaccaacttgggaaataggatttttgtaaattatgcctcaacttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taccttgggcttgaccaccaacttgggaaataggatttttgtaaattatgcctcaacttg 382
Query: 183 ttaatagctttcctcttcagttaacaagatgccttagtagactgctgcatggtcagtttt 242
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttaatagcgttcctcttcagttaacaagatgccttagtagactgctgcatggtcagtttt 442
Query: 243 atatgtgtggtcatgctaatagcttattaatattacttcctcattggttagatttattgc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atatgtgtggtcatgctaatagcttattaatattacttcctcattggttagatttattgc 502
Query: 303 tgagcaatcagtctttaatgtgaccccaaattccagatcaagcatgctatgcaccatttg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgagcaatcagtctttaatgtgaccccaaattccagatcaagcatgctatgcaccatttg 562
Query: 363 gcaggacaattttaacactgcttgtatggatattaattttttgtcagtctcactttgtgt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcaggacaattttaacactgcttgtatggatattaattttttgtcagtctcactttgtgt 622
Query: 423 ccttggtcagttcattaaattttcgggtggatgactatctccctctattaacttgatgat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccttggtcagttcattaaattttcgggtggatgactatctccctctattaacttgatgat 682
Query: 483 attctacttgtcaagaatggaagaagaaagagctaattaaaagtatgaaaggccct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attctacttgtcaagaatggaagaagaaagagctaattaaaagtatgaaaggccct 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_f14.g1 MSMg01no360_f14.g1 CHROMAT_FILE:
MSMg01no360_f14.g1 PHD_FILE: MSMg01no360_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:04 2005
(515 letters)
>mm_chr17_77398960_77399873
Length = 914
Score = 988 bits (511), Expect = 0.0
Identities = 514/515 (99%), Gaps = 1/515 (0%)
Strand = Plus / Minus
Query: 1 caccaacagaaaggcaagtagaattttaagacaaattatcacatgaattaaaaatctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 caccaacagaaaggcaagtagaattttaagacaaattatcacatgaattaaaaatctatg 655
Query: 61 tattaaccaagatcttgaaaaaaaagattctactaaatgaagaataaattaagggaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tattaaccaagatcttgaaaaaaaagattctactaaatgaagaataaattaagggaattt 595
Query: 121 tctaaaagtgcagtaatcaaggcattctaatcaggataagaaaattgtaaagcaggtaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tctaaaagtgcagtaatcaaggcattctaatcaggataagaaaattgtaaagcaggtaac 535
Query: 181 tggaagaaaatgaagtcaagaaagaacacatttacaattaattatccaacatacataaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tggaagaaaatgaagtcaagaaagaacacatttacaattaattatccaacatacataaat 475
Query: 241 agatttttttcaaagtctttccaacaaatattgcttgaacccatttagtatcctgatgga 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aga-ttttttcaaagtctttccaacaaatattgcttgaacccatttagtatcctgatgga 416
Query: 301 gaaagaacaggaaacaactcaacattttattttctaaaactctccattaaaaacagtaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaaagaacaggaaacaactcaacattttattttctaaaactctccattaaaaacagtaat 356
Query: 361 tcaaaacaatgagttagaagttaatacgtatattgttaagtgtgatgcaatgggttaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcaaaacaatgagttagaagttaatacgtatattgttaagtgtgatgcaatgggttaacc 296
Query: 421 atattgaagttaattaattttatatcaaaaattgtgatgcctttaaattaaaatgtccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 atattgaagttaattaattttatatcaaaaattgtgatgcctttaaattaaaatgtccag 236
Query: 481 gtagttttgataggaggaaaaacactaagtttcat 515
|||||||||||||||||||||||||||||||||||
Sbjct: 235 gtagttttgataggaggaaaaacactaagtttcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space: 456520
Effective search space used: 456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
