BAC Information

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BAC

Clone NameMSMg01-360F24
Chromosome17 (Build37)
Map Location 21,052,137 - 21,052,627
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4
Downstream geneLOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360F24.T7 (MSMg01no360_f24.b1)MSMg01-360F24.TJ (MSMg01no360_f24.g1)
ACCAG469565AG469566
length778787
length of high quality
(start - end)		495 (45 - 539)---
definitionCHROMAT_FILE: MSMg01no360_f24.b1 PHD_FILE: MSMg01no360_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:06 2005CHROMAT_FILE: MSMg01no360_f24.g1 PHD_FILE: MSMg01no360_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTGGAATTTCTTTTTATCTCCTATCACAATAAAGCAGAATAAAA
ATTTTTGAATGGTTGCTTAAAGGTGATTGGTAAGAAAGAGGGAGACTTTG
TAGAATAAACAACAAAGAGAAATGGCTAGATATTTAAAAAAACCCAAGAC
ATAAATATTCATGCCATACATATAATGAACTAATTATGACACTCTTTTAA
ATTGTGTCCTGAGTCTTTGTGATAATTTATGGTTTTTGCATATTCATTCA
TATTATTAAAATATGAAAGGAATATGCAGCATTTTACAGAAAGAAGTTAG
AAACACAGCATGTATTAGACCTTCTTAAATTCCATCTACTTGGAGTAGAC
TCAAAAGGAAATGCATGATGTATACTCACATATAAGTAGATATTAGCCAT
AAAGTACAGGATTACCATGCTACAAACCACAGATCCAAAGAAGTCCAATA
ACAAGTAAGGTCCAAGGAACAATGTTTTACTCTCCCTCAGAAGGGGAAAT
AANACAGATATCAGAAGTCAAGGAGGGATGGAACCAGGTAGGTGAAGTGA
ACAGAGCCAGGAGATCACCTGTAGGGATGAAGGGGAGAGAACAGAAATCA
GTGGCAGGCAGGAGAAACTCTATGAAGTTGCCATCTCCCAGTCCACCGGA
GGGAATCCTAACGGAAACTGCTANGGGGGGAAAAAAATGGACTTTTTATA
AAACCCTTACTTTTTGTTGAAAAGAACN

TTTTTTCCTACTACAGAACTTNGGCATTCCNCCACACTXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAATGACAGCTAGGCCTCCATGAATAGACTTAC
TCCCCAGCANGCTCCTAACATCCCCTTGTNGATGCTCTTCTGGCTGTGAA
CCTTTGTCTCTTAACTACNGAGNCTTCTTCGNNANCCCTGGTTGTCTGTC
TTGCAGGGAAAACCAAACCATCCCTTTTTCTGAATTTAATGCCCTGGAAT
TGCCCTGGGACCTTTAAGCCCGCCGGTNTTTTACCAAAAAATTTTCTNGC
CCGGGTTACCTCCCCCCCCTTTCCTCCCCCTTTTTTTTTTTTTCCCCTTG
CCCCCTTCTCCTGGGGGGGGGTTTTCTCACCCCCCCCCCCCCNNNCCACT
TTTTTATCCCCAAAACACTTGGGGGGCCCCCCCCCCCCCCCCTTTTTTTT
TTNNAAAAAAACTCCCCCCCCCCTCNTCAAAAANNNNNTTTTTNNCCNTT
TGGCTCCCCCCCCTTTTTTTTTCCCCCTTCCNNTNTGCTTTCCCCCTCCT
TTTCNCTCTAAAACCCCCCCCCCCCCCCCCCCTCNTTTTTTTTTTTTNNN
NCNCCCCCCCCCCCTCCCAACTTCCTGTGGGAGAGGAAAATATTTCCCTT
TTTCCCCCCCTTTCCCCTTTNCNCTCCCNNTAANCNNCNCTTCCTTTTTT
CTTTCCCCCCCCCCTTTCTTCCTCCACCCTCCCTTCCCNCTCCTTCCTTC
CCCTCTCCCCCCTTTTTTATAAATTAAAATAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_f24.b1 MSMg01no360_f24.b1 CHROMAT_FILE:
MSMg01no360_f24.b1 PHD_FILE: MSMg01no360_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:06 2005
         (495 letters)



>mm_chr17_21051933_21052827
          Length = 895

 Score =  942 bits (487), Expect = 0.0
 Identities = 490/491 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtggaatttctttttatctcctatcacaataaagcagaataaaaatttttga 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtggaatttctttttatatcctatcacaataaagcagaataaaaatttttga 264

                                                                       
Query: 65  atggttgcttaaaggtgattggtaagaaagagggagactttgtagaataaacaacaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggttgcttaaaggtgattggtaagaaagagggagactttgtagaataaacaacaaaga 324

                                                                       
Query: 125 gaaatggctagatatttaaaaaaacccaagacataaatattcatgccatacatataatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaatggctagatatttaaaaaaacccaagacataaatattcatgccatacatataatga 384

                                                                       
Query: 185 actaattatgacactcttttaaattgtgtcctgagtctttgtgataatttatggtttttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actaattatgacactcttttaaattgtgtcctgagtctttgtgataatttatggtttttg 444

                                                                       
Query: 245 catattcattcatattattaaaatatgaaaggaatatgcagcattttacagaaagaagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catattcattcatattattaaaatatgaaaggaatatgcagcattttacagaaagaagtt 504

                                                                       
Query: 305 agaaacacagcatgtattagaccttcttaaattccatctacttggagtagactcaaaagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaaacacagcatgtattagaccttcttaaattccatctacttggagtagactcaaaagg 564

                                                                       
Query: 365 aaatgcatgatgtatactcacatataagtagatattagccataaagtacaggattaccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatgcatgatgtatactcacatataagtagatattagccataaagtacaggattaccat 624

                                                                       
Query: 425 gctacaaaccacagatccaaagaagtccaataacaagtaaggtccaaggaacaatgtttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctacaaaccacagatccaaagaagtccaataacaagtaaggtccaaggaacaatgtttt 684

                      
Query: 485 actctccctca 495
           |||||||||||
Sbjct: 685 actctccctca 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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