BAC Information

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BAC

Clone NameMSMg01-360G08
Chromosome17 (Build37)
Map Location 16,863,338 - 17,017,408
singlet/doubletdoublet
Overlap geneLOC665072, EG383211, LOC626785
Upstream geneChd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394, LOC213781, LOC100041407
Downstream geneLOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360G08.T7 (MSMg01no360_g08.b1)MSMg01-360G08.TJ (MSMg01no360_g08.g1)
ACCAG469581AG469582
length762768
length of high quality
(start - end)		523 (45 - 567)429 (75 - 503)
definitionCHROMAT_FILE: MSMg01no360_g08.b1 PHD_FILE: MSMg01no360_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:08 2005CHROMAT_FILE: MSMg01no360_g08.g1 PHD_FILE: MSMg01no360_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(17,016,890 - 17,017,408)(16,863,338 - 16,863,766)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGACTTTATCCCAGTTAAACTCTAATATTGGTCTGTAACAGACAC
ATTCATTAAACATGAGCAAGGGATAATTTCTAAAATCACATAGGTCTAGA
AAATGGTAAAATAGAAAGGTATCTCAGTATAAGTTTTGTTTTATATTCAC
TCTAGAAGTATGTTAAACTAAAGAGTTTATTAAGTTCACAGTCATCTATT
AAAATGTAAAAGCTGTAAAAAGAAATACATTGACTTTGCACTTCAACAAT
TCAATTTAGTAGAAAAATGTATAAAGACCTCGAAAAGAGAAAACAAAGTC
AAGATATTCAGAATGTAGTGGGTATGAGAAACAAAGAGTGTCCATGACAA
AGCAGAGGAATAAAATAAATAAGGATAACCAAGAGCAGAACAATATAAAC
TCATGAGTGATTATGTATTATTCTGGGTGTAAAGGAAAAGTAAAGATGTG
TACAAGGTTGTTATCTGAAATATAGCATGCACGTAACACTATTAGAGAGA
TAGAGGGGGATGAAAGACCAAGTTTTATACACTTTAATAGTTTAAGAGAG
AGGTATCTTGTAAACCTACTTATAAGATTTCCTGAGAGATTATGACAGTC
TCCAATTATCTTTATTATCTTCATTTTCCTAATCTAATTGAGGTGCTGTT
TTTAAATGAAGGCCTTGTTATTTAAGTGAAAAGAAACTTTAAAATTCAAA
TTTTCTCCTTTA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAAGTTAGATTCCAGAGAACCAAA
TAATCCTATTTAAAAATAGATAACAGGTTCTATCATCAACCTGTGGCAGC
AAGATATCTCACAGGAAATTCTCAGCTCCCACGCATGGGTCCTTGGGCTT
CTTGCTTTGAAGGTGAAGCACTTGGCAATATGGGAAATTGAAGAGCTTCC
CTAAGAATGACCCCTTCATGCCTGTTCACCTCACAACCTTTCTAGGGTAC
AAGGCTGGCATGACCCACATCATCCGGGAAGTACACAGGCCAGAATCTAA
GGTGAACAAGAACGAAGTCGCGGAGGCTATGAACATTGTAGAAACCCCAC
CCATAGTGGTTGTGGGCATTGTAGGATATGTTGAAACCCCAGGAGTCCTC
CAGACCTTCAAGACTATATTTTCTGAACATATCAGTGATTAGTGCAAAAG
GCGGCTCTATAAGAACTTGGCCCAATCTAAGAAAAAGCCTTTCATCGAGT
ACTGTAAGAAATGTTGCGATGACACAGGTTATAAACACCTGGTTTACTGA
CTTTGGCAGCATAAACACATACCTGTCAGTTCCTCTGTCTAATTGTGACC
CTTTTTAAGGGGTTCGTCCCCCCTTGAACCCAAAAAAACCTCCTTCGACC
TTTAACCCTTTCCGAACTGGCGCTATCTCGCTCCCAACATACCCCCTTCC
TTCCTTCACATTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_g08.b1 MSMg01no360_g08.b1 CHROMAT_FILE:
MSMg01no360_g08.b1 PHD_FILE: MSMg01no360_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:08 2005
         (523 letters)



>mm_chr17_17016686_17017608
          Length = 923

 Score =  980 bits (507), Expect = 0.0
 Identities = 516/519 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagactttatcccagttaaactctaatattggtctgtaacagacacattcatta 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaattccagactaaatcccagttaaactctaatattggtctgtaacagacacattcatta 664

                                                                       
Query: 65  aacatgagcaagggataatttctaaaatcacataggtctagaaaatggtaaaatagaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aacatgagcaagggataatttctaaaatcacataggtctagaaaatggtaaaatagaaag 604

                                                                       
Query: 125 gtatctcagtataagttttgttttatattcactctagaagtatgttaaactaaagagttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gtatctcagtataagttttgttttatattcactctagaagtatgttaaactaaagagttt 544

                                                                       
Query: 185 attaagttcacagtcatctattaaaatgtaaaagctgtaaaaagaaatacattgactttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 attaagttcacagtcatctattaaaatgtaaaagctgtaaaaagaaatacattgactttg 484

                                                                       
Query: 245 cacttcaacaattcaatttagtagaaaaatgtataaagacctcgaaaagagaaaacaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cacttcaacaattcaatttagtagaaaaatgtataaagacctcgaaaagagaaaacaaag 424

                                                                       
Query: 305 tcaagatattcagaatgtagtgggtatgagaaacaaagagtgtccatgacaaagcagagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcaagatattcagaatgtagtgggtatgagaaacaaagagtgtccatgacaaagcagagg 364

                                                                       
Query: 365 aataaaataaataaggataaccaagagcagaacaatataaactcatgagtgattatgtat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aataaaataaataaggataaccaagagcagaacaatataaactcatgagtgattatgtat 304

                                                                       
Query: 425 tattctgggtgtaaaggaaaagtaaagatgtgtacaaggttgttatctgaaatatagcat 484
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 303 tattctgggtgtaaaggaaaagtaaagatgtgtacaaggttgttgtctgaaatatagcat 244

                                                  
Query: 485 gcacgtaacactattagagagatagagggggatgaaaga 523
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcacgtaacactattagagagatagagggggatgaaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_g08.g1 MSMg01no360_g08.g1 CHROMAT_FILE:
MSMg01no360_g08.g1 PHD_FILE: MSMg01no360_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:08 2005
         (429 letters)



>mm_chr17_16863138_16863966
          Length = 829

 Score =  830 bits (429), Expect = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaagttagattccagagaaccaaataatcctatttaaaaatagataacaggttctatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaagttagattccagagaaccaaataatcctatttaaaaatagataacaggttctatc 260

                                                                       
Query: 61  atcaacctgtggcagcaagatatctcacaggaaattctcagctcccacgcatgggtcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaacctgtggcagcaagatatctcacaggaaattctcagctcccacgcatgggtcctt 320

                                                                       
Query: 121 gggcttcttgctttgaaggtgaagcacttggcaatatgggaaattgaagagcttccctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcttcttgctttgaaggtgaagcacttggcaatatgggaaattgaagagcttccctaa 380

                                                                       
Query: 181 gaatgaccccttcatgcctgttcacctcacaacctttctagggtacaaggctggcatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatgaccccttcatgcctgttcacctcacaacctttctagggtacaaggctggcatgac 440

                                                                       
Query: 241 ccacatcatccgggaagtacacaggccagaatctaaggtgaacaagaacgaagtcgcgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacatcatccgggaagtacacaggccagaatctaaggtgaacaagaacgaagtcgcgga 500

                                                                       
Query: 301 ggctatgaacattgtagaaaccccacccatagtggttgtgggcattgtaggatatgttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctatgaacattgtagaaaccccacccatagtggttgtgggcattgtaggatatgttga 560

                                                                       
Query: 361 aaccccaggagtcctccagaccttcaagactatattttctgaacatatcagtgattagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccccaggagtcctccagaccttcaagactatattttctgaacatatcagtgattagtg 620

                    
Query: 421 caaaaggcg 429
           |||||||||
Sbjct: 621 caaaaggcg 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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