BAC Information

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BAC

Clone NameMSMg01-362D23
Chromosome17 (Build37)
Map Location 55,707,460 - 55,707,886
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2
Downstream geneLOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362D23.T7 (MSMg01no362_d23.b1)MSMg01-362D23.TJ (MSMg01no362_d23.g1)
ACCAG470979AG470980
length757774
length of high quality
(start - end)		531 (51 - 581)427 (79 - 505)
definitionCHROMAT_FILE: MSMg01no362_d23.b1 PHD_FILE: MSMg01no362_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:32 2005CHROMAT_FILE: MSMg01no362_d23.g1 PHD_FILE: MSMg01no362_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATCAGACCTTCAAAGAAGACCTAATACCAATATTCCTCA
AATTATTCCAAAAAATAGAAACAGAAAGTACTCTACCCAATTCGTCCTAG
GAAGCCACAATTATTCTAATACCTAAACTACACAAAGACCCAAAGAAAGA
GAACTTCAGACCAATTTCTCTTATGTATATTGATGCAAAAATACTCAATA
AAACCTTTGCAAACCGAATCCAAGAACACATCAAAATGATCATCCATCAT
GATCAAGTAGGCTTCATTCCAGGGATGCAGGGATGGTTCAATATACAGAA
ATTCAACAAACTAAAAAGAAAAAGCAAACAAACAAAACCCACGCATGATC
TTTTTATTATATTTCTGAGAAAAGTATCTGACAAAATCTAACACCCATTC
ATGACAAAAGTCTTGGAAATATCAGGAGTTCAAGGCTCATACTTAAACAT
AGTAAAGGCAATATTCAGCAAACCAGTAGCCAACATCAAACTAAATGGAG
AGAAACTGGAAGCAATCCCACTAAAATCAGGGACTAGAAAAGGCTCTCTC
CCTACTTGTTCAACATAGTACTCAAAGTCCTAGCCAGAGCAATTAGACCA
CAAAGGGAGATCAAGGGATACATATTGGAAAGGGAAGAAGCCAAATATCC
CTATTTGCCGATGAAATGAGAGGATACTTAAGTGACCTTAAAATTTCTCC
CCAGAAG

NNCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGTAATAGGCCCCAGAGCC
ACTGAAGGAATGAATGTGCTAGCACAGCAAGGACAAGCAGTCAAAGAAAA
CATTCTTCTTCCATTTTCTAGAAGAAGCTGTGGCCCAGATTAAAGGTGCA
TCTTCCCACATCAAGATCCTGACTGAGTTGTAAAAATAGCATTCCTGTGT
ATTCTCCATCCACTTGCCCCTTGTTTTCACATCTTCTCTAACAAAAACAT
TTACAAAATTAAGAGTTAATAATGCTATTAATATTAGGGAAAGGAGCAGG
CTAAATGTAGATACTTATTTATCGTTTTAGGAGCATCCTCTTAACCATTC
CAGATTCTATTTTGCATTTGGTTGTCTGTCTCAGTAGTCTTTCACTCTGT
GACATGGCATGTGCTTCTAGAGCAGTTCACATCGAGAACTCTGCTAAAGT
GGTGTCTGCTAGGAGCCTCAACTGTTAGCTTTACACTGCTTTCCTTTGAA
TTACTATTTGCTAGAGATACTTTGAGACTATGCAAATATCCTGTTTCTGC
TTAGACTTTGCCTCTTACTACCTCCTGGCAGNTTTTTGGTTTGTTTTGGT
TTTTGGTTTTGAATTTTGGGNTTGGTTTGGTTTTTTTTTTTTTTTTTTTT
GGTGGGAGGATTTATAACAAGGGGGGTAAAAAGGGGATTTTTTAATCCAA
TTCCCTTCAATATTAAAAACGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_d23.g1 MSMg01no362_d23.g1 CHROMAT_FILE:
MSMg01no362_d23.g1 PHD_FILE: MSMg01no362_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:32 2005
         (427 letters)



>mm_chr17_55707260_55708086
          Length = 827

 Score =  826 bits (427), Expect = 0.0
 Identities = 427/427 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtaataggccccagagccactgaaggaatgaatgtgctagcacagcaaggacaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtaataggccccagagccactgaaggaatgaatgtgctagcacagcaaggacaagc 260

                                                                       
Query: 61  agtcaaagaaaacattcttcttccattttctagaagaagctgtggcccagattaaaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcaaagaaaacattcttcttccattttctagaagaagctgtggcccagattaaaggtg 320

                                                                       
Query: 121 catcttcccacatcaagatcctgactgagttgtaaaaatagcattcctgtgtattctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcttcccacatcaagatcctgactgagttgtaaaaatagcattcctgtgtattctcca 380

                                                                       
Query: 181 tccacttgccccttgttttcacatcttctctaacaaaaacatttacaaaattaagagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccacttgccccttgttttcacatcttctctaacaaaaacatttacaaaattaagagtta 440

                                                                       
Query: 241 ataatgctattaatattagggaaaggagcaggctaaatgtagatacttatttatcgtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataatgctattaatattagggaaaggagcaggctaaatgtagatacttatttatcgtttt 500

                                                                       
Query: 301 aggagcatcctcttaaccattccagattctattttgcatttggttgtctgtctcagtagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagcatcctcttaaccattccagattctattttgcatttggttgtctgtctcagtagt 560

                                                                       
Query: 361 ctttcactctgtgacatggcatgtgcttctagagcagttcacatcgagaactctgctaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcactctgtgacatggcatgtgcttctagagcagttcacatcgagaactctgctaaa 620

                  
Query: 421 gtggtgt 427
           |||||||
Sbjct: 621 gtggtgt 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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