BAC Information

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BAC

Clone NameMSMg01-362E12
Chromosome17 (Build37)
Map Location 22,677,098 - 22,677,698
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik
Downstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362E12.T7 (MSMg01no362_e12.b1)MSMg01-362E12.TJ (MSMg01no362_e12.g1)
ACCAG471005AG471006
length761763
length of high quality
(start - end)		609 (42 - 650)531 (72 - 602)
definitionCHROMAT_FILE: MSMg01no362_e12.b1 PHD_FILE: MSMg01no362_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:35 2005CHROMAT_FILE: MSMg01no362_e12.g1 PHD_FILE: MSMg01no362_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTTACTGTCGCCTGATTTCCACCACTCCTGATCACAGCTCAATTGATA
CTCAAGAACTTGCATGGAACTGAATGATTGGGATAACTGTATGTTACACT
GCTGAATTTCTTAGTTTATCATAAAATAAAATTAAAATAAGCCTGATTCC
AACCAACAGGACCAAATCTAAGAGGAAAATATCATGCAGTTATTTTGTCC
TCTGAGGTTCTGCCTTTACCCTGTGTGATGTGAGGCTACTCCACATAGAA
TTCACAAAAATACAAAGTACGTCTCACTAGAAAGCTCAGTATCACTAGAT
ACTGCATTAATGTTATTTGTTCTGAAAAAACAAATTTAAAACAACTACTG
CAATTCTTGACCATACAATTTATGTACAGAGTAGAGTGAGCAAGTTCTAG
GCATTGCCATTTTTCCTGAATGAAGAATACAGCCATAAGGAACGTCATCA
AGTCCTATAATTCAATGAAAATATTTGAGCTATCTGTATTGGTACAGTTC
TTCAATCCTAGCATCCTAGGAAGAGGAAGGGAAATCCCATGTAAATCCAG
GCTTGATCTAGTGCCACAATAGCATTATATCTATTTTTGCATACAAGTGA
TAAAGGAAATCATTTTTTTAGATTATTCTTCTGTAAAGATCCTGGCCAGC
ATTAGATAAATAGAATATTCCTCATAAAACCCAGTTATTATTATCTTAAG
ACTACTACCAG

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCAATGAAGT
AGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAA
AGGATAAACAGGCTGAGAAAAAAATTAGGGAAACAACACCCTTCTCAATA
GTCACAAATAATATAAAATACCTTGGTGTGACTCTAACTAAGGAAGTGAA
AGATCTGTATGATAAGAACTTCAAGTCTCTAAAGAAAGAAATTAAAGAAG
ATCTCAGAAAATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAAT
ATAGTAAAAATGGCTATCTTGCCAAAAGCAATCTACATATTCAATGCAAT
CCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATTT
GCAATTTCATCTGGAATAACAAAAAAACTAGGATAGCAAAAACTCTTCTC
AATGAAAAAAGAGCCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTA
CTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGCGACAGAC
AAGTAGACCAATGGAATAGAATGGGAGACCCAAAAATGAACCCAAAAACC
TATGGTCACTTGATCTTTGACAAGGGAGTTAAAACCGTCCAGTGTAAAAA
AGACAGCATTTTTCACAAAATGGGCTGGCATAACTGCCGGTTTTCTTGTA
GAAGAATTCGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_e12.b1 MSMg01no362_e12.b1 CHROMAT_FILE:
MSMg01no362_e12.b1 PHD_FILE: MSMg01no362_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:35 2005
         (609 letters)



>mm_chr17_22676894_22677898
          Length = 1005

 Score = 1054 bits (545), Expect = 0.0
 Identities = 589/605 (97%), Gaps = 4/605 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttactgtcgcctgatttccaccactcctgatcacagctcaattgatactcaa 64
           ||||||||||||||| |||   | ||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattcagttactgtagcc---tctccaccactcctgatcacagctcaattgatactcaa 749

                                                                       
Query: 65  gaacttgcatggaactgaatgattgggataactgtatgttacactgctgaatttcttagt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 748 gaacttgcatggaactgaatgattgggataactgtatgttacactgctgagtgtcttagt 689

                                                                       
Query: 125 ttatcataaaataaaattaaaataagcctgattccaaccaacaggaccaaatctaagagg 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttatcataaaataaaattaaaagaagcctgattccaaccaacaggaccaaatctaagagg 629

                                                                       
Query: 185 aaaatatcatgcagttattttgtcctctgaggttctgcctttaccctgtgtgatgtgagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aaaatatcatgcagttattttgtcctctgaggttctgcctttaccctgtgtgatgtgagg 569

                                                                       
Query: 245 ctactccacatagaattcacaaaaatacaaagtacgtctcactagaaagctcagtatcac 304
           || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 568 ctcctccacatagaattcacaaaaatacaaagtacttctcactagaaagctcagtatcac 509

                                                                       
Query: 305 tagatactgcattaatgttatttgttctgaaaaaacaaatttaaaacaactactgcaatt 364
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 508 tagatactgcattaatgttatttgttctgaaaaa-caaaattaaaacaactactgcaatt 450

                                                                       
Query: 365 cttgaccatacaatttatgtacagagtagagtgagcaagttctaggcattgccatttttc 424
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cttgaccatacaatttctgtacagagtagagtgagcaagttctaggcattgccatttttc 390

                                                                       
Query: 425 ctgaatgaagaatacagccataaggaacgtcatcaagtcctataattcaatgaaaatatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctgaatgaagaatacagccataaggaacgtcatcaagtcctataattcaatgaaaatatt 330

                                                                       
Query: 485 tgagctatctgtattggtacagttcttcaatcctagcatcctaggaagaggaagggaaat 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 329 tgagctatctgtattggtacagttcttcaatcctagcatcctaggaagaggaagggagtt 270

                                                                       
Query: 545 cccatgtaaatccaggcttgatctagtgccacaatagcattatatctatttttgcataca 604
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 269 cccatgtaaatccaggcttgatctagtgccacaatagcattatacctatttttgcataca 210

                
Query: 605 agtga 609
           |||||
Sbjct: 209 agtga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1005
Length adjustment: 10
Effective length of query: 599
Effective length of database: 995
Effective search space:   596005
Effective search space used:   596005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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