BAC Information

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BAC

Clone NameMSMg01-362L13
Chromosome17 (Build37)
Map Location 27,798,145 - 27,798,682
singlet/doubletsinglet
Overlap genePacsin1
Upstream geneAtp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10
Downstream geneSpdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362L13.T7 (MSMg01no362_l13.b1)MSMg01-362L13.TJ (MSMg01no362_l13.g1)
ACCAG471339AG471340
length740750
length of high quality
(start - end)		565 (48 - 612)541 (77 - 617)
definitionCHROMAT_FILE: MSMg01no362_l13.b1 PHD_FILE: MSMg01no362_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:11 2005CHROMAT_FILE: MSMg01no362_l13.g1 PHD_FILE: MSMg01no362_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGTACAGAAGAGCAGAAAAAAGAGCATCTCAGCTCACCGGCC
AGGCAGCCAGCTGAATGGCCAGCTTCAGGTTCAAAAAAAGACTCTGTCCC
AAGGGAATAAGGCCAGAAGTGGTAAGAGTGGAGCCAGGCAGGCCTAATGA
CAATTGCCTTTAGTTCCAGCACTCAGGAGCAGAAGCAGGCAGCGTTTTCC
GAGTTCATGGCCAGCCTGGGCTACACCTGAGATACTCTCTCCAACACAGA
GTGACAGAGTAAGACCGGGCACCTTCTCTGATCCACAGGCACATGCATTG
GCAGATACCACACATAGGAGAACAAAAAACTATCAACTATCTAAACAAAA
CAAAACAAACCCTGTCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
GCCCGTGTCTGTAATGCTAGGACTTGAGAAGCTAAGACAGGAGGATCTAG
AATTCAAACCATCCTCCTCCACACCTAGCAAGTTGGAGGCCCTCCTGTGC
CACATGAAAGTAAATGAATTTCAGAAAAGGCCATGTTCTAAATATACCCC
TGTAATTTAAAGTAAATGCAAAGTCTTGCCAGGGTTTGAGACCAAAACAC
AAAAGGTTCCTATGAATAAAAAGGGCCAGCAGGGGTCCAGAAAACATTGG
AATGGTCTGAACATCAGGGTTCCCCTGTATAATTCTCTTN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGTCTCCTCCTCTCTGGCGGT
AGGAGTGCTGAGATTACAGACACTTCTGTACCCAGCCTGGTGTGTGTTCT
GGGGACTCAAACTCAGGTCCTGATGCTCACAGGGTGAGCCACTTTACCCG
CCAAGCCACCGCCCCAGCCCACAGAGCAGTTTTGAATTCTGTGTCTGTAA
ACTGATTCTGCACGCCGCCCGGCGAGCGCTTGCCCATTCAGATGGGGCAG
AGAGGTTTACCATCAACATGGAGCTTCTAAATATGGTTAATCCAGCACGG
CACAAATCCTTGCAGTAAGCCTTTTCCTGGCCGAGGGTGTGGCAGACAAA
CCCATCACATCTCTGAGAGAGAGTACGCTGGCACCCCTTTTTGGAAACAT
CATTTTGGGGGTGAGCCCAATAGGTGCAGTCTTAGCAAGCAGCAGTGGTG
AGTGACAGGTCACCAGGAAGACGAATCTAGTGAGGACCCCCCCTCTCCCT
TCCCCTCACACTCCTGACAACCAAGGTAGTTCTTCATTCTGTTGTCATTC
AGTCAGCCGCCCCAGGCACTGTTGTAAGCCCCTGGGGATACTGGAGGGAA
AGGGACAACCTGAAAAGAAGTTATAACTCATGATAGGGTAAAGCAGGTGA
ACTTATATATGATTAAGGGTTGATAATGTTATAATTAATGGTTTTGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_l13.g1 MSMg01no362_l13.g1 CHROMAT_FILE:
MSMg01no362_l13.g1 PHD_FILE: MSMg01no362_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:12 2005
         (541 letters)



>mm_chr17_27797941_27798882
          Length = 942

 Score =  971 bits (502), Expect = 0.0
 Identities = 529/538 (98%), Gaps = 1/538 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtctcctcctctctggcggtaggagtgctgagattacagacacttctgtacccagcctgg 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gtctcctcctctctggcggtaggagcgctgagattacagacacttctgtacccagcctgg 264

                                                                       
Query: 65  tgtgtgttctggggactcaaactcaggtcctgatgctcacagggtgagccactttacccg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgtgttctggggactcaaactcaggtcctgatgctcacagggtgagccactttacccg 324

                                                                       
Query: 125 ccaagccaccgccccagcccacagagcagttttgaattctgtgtctgtaaactgattctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaagccaccgccccagcccacagagcagttttgaattctgtgtctgtaaactgattctg 384

                                                                       
Query: 185 cacgccgcccggcgagcgcttgcccattcagatggggcagagaggtttaccatcaacatg 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 385 cacgccgcccggcgagcgcttgcccgttcagatggggcagagaggtttaccatcaacgtg 444

                                                                       
Query: 245 gagcttctaaatatggttaatccagcacggcacaaatccttgcagtaagccttttcctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagcttctaaatatggttaatccagcacggcacaaatccttgcagtaagccttttcctgg 504

                                                                       
Query: 305 ccgagggtgtggcagacaaacccatcacatctctgagagagagtacgctggcacccc-tt 363
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 505 ccgagggtgtggcagacaaacccatcacatctctgagagagagtacgttggcaccccctt 564

                                                                       
Query: 364 tttggaaacatcattttgggggtgagcccaataggtgcagtcttagcaagcagcagtggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttggaaacatcattttgggggtgagcccaataggtgcagtcttagcaagcagcagtggt 624

                                                                       
Query: 424 gagtgacaggtcaccaggaagacgaatctagtgaggaccccccctctcccttcccctcac 483
           |||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||
Sbjct: 625 gagtgacaggtcaccaggaagacgaatctagtgaggaccccccctcccccggcccctcac 684

                                                                     
Query: 484 actcctgacaaccaaggtagttcttcattctgttgtcattcagtcagccgccccaggc 541
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actcctgccaaccaaggtagttcttcattctgttgtcattcagtcagccgccccaggc 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space:   494892
Effective search space used:   494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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