BAC Information

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BAC

Clone NameMSMg01-363L15
Chromosome17 (Build37)
Map Location 77,762,841 - 77,763,128
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624348, LOC545234
Downstream geneLOC100043887, LOC668795, LOC383275, Crim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363L15.T7 (MSMg01no363_l15.b1)MSMg01-363L15.TJ (MSMg01no363_l15.g1)
ACCAG472094AG472095
length7561,167
length of high quality
(start - end)
291 (275 - 565)---
definitionCHROMAT_FILE: MSMg01no363_l15.b1 PHD_FILE: MSMg01no363_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:32 2005CHROMAT_FILE: MSMg01no363_l15.g1 PHD_FILE: MSMg01no363_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
AACATTCTCTATGATGAATAGTAGCTAAGATGGAGACAGACCTCTAGAAG
AGTCCTTGCTGGTAAGTACAATTGCAATGGTGTTTACTTGTTCATCGCAT
TTAGTTGACGGGTATTTGTTATTTAATTTCAGATAACGAACCAAGCAGAA
GGTGTCTGAAGCAAGAGCCTTGCACCAGGGATGAAGCCTAGCACACTGCT
TATACATGTATACTAGAGACAAGTAGCAATGCTTTTTAAGGAAAATAGTT
CAAAGAAAACATTGTTATTGACAAATCTATTACACTCATTTAACACCCTG
CTATGTCAGCTCCATGCACACTTTTTCCCACGGCTAAAGGTGTCTGGAGA
CAACCATGATGATCGGTCTCATTTTGAACTTCTGAGCTCAATCTTGAAGT
GGTGGTAGAAATACTTCCTGTATTTTCCCAAATCATTCATTCTGATATCT
TACGTGGTTTATACCTTCTAGTCATTACCCCCAAGCAATCTCCATTAATA
TAACAAGACTTGCGCAACAGAGATACTAGAAACTCCATTAGATTTGAACA
ACTTCCCAAAGTTTTTTGCATGTGCACATTGAGATGGAAAAGGAGGATTA
TTAGGGCATATTTAGACATTAAATCCGTATCTTAGTGAATGAGGATGAGA
ATATACCCTTTCGTATGGAATAAATCCTTCTAATGGGGGCCCCTAAAAGT
TACTGG
CGCCGCGACACGACCTTTNATGTGTAAGTGGTATGGCGGGCGGGGGCCGC
TCCCACCACTTTAGCCGAGCACCCACACACATGCGTTCTCTCGCCGCTTG
GTCGACTGTGTGCGTTCGTTAGTTTCCTTCCTTGTTATGTCGTGCTGATA
TATTGTGTAGCACTCAGGGCGGTGTGGTGTGTTGTGCCGCCTCTTCTCGC
ATTTCTATCCTTATCTCTCTCGCGGGCCTCCCTCTGTTGGTCCATTTCTC
GTCGCGCGCTTGGTGCATCCTTGCGACCCCAGAAGATGGTGGGCTTGGTA
TGGGCGTGGTGGCTTGGGCGTCGGGGCGAGGGTGATCGTGCGGCGGGTGG
GGGCGCATTTCCCGGCGGGCCGTGTGTGGCGCGGTGGTGATGGATGTGTT
GGTACCAGGTAGCGGGACGCGTTTCACTTTTACCAGCTTGTCACTGCCCC
CTGTCCCCCAATGACCGGTGGTGCCCTCTTACGCCATTCTCTAGGAAGTT
GGTGTGTCGCTGCATTCGCTTGTGCCTCATAACACTAACTCCTAAGTAGT
GGTCAACTGCGGATGGCCCGCCAGTTCGGAAGAATTTAACATCACCGTGT
GTGCGCAGGCTTTTCCCTCCGACCTCCTTCACCTGTTTGATTTGTTAGCA
CAAAGAGTGTAATATAAAACACAAGTAATTCCGTTGCTTTCCTTTCGACT
GCGCGAACTTTATCCTACGACTCCAGACGACATCCTCCCCATTTCGACAT
TCTCTCGCCATTTCTCATCACTCTTTGTCTTCTCACACTATACACCAGTC
ACCCCGCCGCTCACTATTTTTCCCAAGTGTGCCGTTACTCCCACGCCTTT
AGTAGGCTTTACTGTCGCGCAGCTGTGTTATATACTATCTCGCGCTCCCG
CCTATTATTAGACATGTCTCCCCCGCTCTTATTCCTCCTTGCCGCGGTCT
ATTCCACACCATTCCGCCTCGTCCCTCACCCCTTGTATCTTGCTCCCGCG
CCTATTCCTCTTCGCCCTCGTGTCTCCTCACGTTGCCGCGATTTGCACGA
TATCTTGACGTGTTGGGCCATTCTATCAGTCGAAATGACATTAGTTGTTC
GTAACGCGTGGAAGAANAGCACGAGCATTCTTACACACACGTACAACAGT
CTAGCGTGTGTCGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_l15.b1 MSMg01no363_l15.b1 CHROMAT_FILE:
MSMg01no363_l15.b1 PHD_FILE: MSMg01no363_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:32 2005
         (291 letters)



>mm_chr17_77762823_77763513
          Length = 691

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaatgctttttaaggaaaatagttcaaagaaaacattgttattgacaaatctattaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agcaatgctttttaaggaaaatagttcaaagaaaacattgttattgacaaatctattaca 247

                                                                       
Query: 61  ctcatttaacaccctgctatgtcagctccatgcacactttttcccacggctaaaggtgtc 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 246 ctcatttaacaccctgctatgtcagctccatgcacactttttcccatggctaaaggtgtc 187

                                                                       
Query: 121 tggagacaaccatgatgatcggtctcattttgaacttctgagctcaatcttgaagtggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tggagacaaccatgatgatcggtctcattttgaacttctgagctcaatcttgaagtggtg 127

                                                                       
Query: 181 gtagaaatacttcctgtattttcccaaatcattcattctgatatcttacgtggtttatac 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 126 gtagaaatacttcctgtattttcccaaatcattcattctgatatcttaggtggtttatac 67

                                                           
Query: 241 cttctagtcattacccccaagcaatctccattaatataacaagacttg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  cttctagtcattacccccaagcaatctccattaatataacaagacttg 19


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)