BAC Information

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BAC

Clone NameMSMg01-364A09
Chromosome17 (Build37)
Map Location 59,713,404 - 59,878,675
singlet/doubletdoublet
Overlap geneLOC100043542
Upstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364A09.T7 (MSMg01no364_a09.b1)MSMg01-364A09.TJ (MSMg01no364_a09.g1)
ACCAG472320AG472321
length775809
length of high quality
(start - end)		520 (48 - 567)380 (78 - 457)
definitionCHROMAT_FILE: MSMg01no364_a09.b1 PHD_FILE: MSMg01no364_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:57 2005CHROMAT_FILE: MSMg01no364_a09.g1 PHD_FILE: MSMg01no364_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,713,404 - 59,713,918)(59,878,296 - 59,878,675)
sequence
NNNCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCG
CGGAATTCACTCTGTATTCCAGGCTGGCCTTGAACTCAGAAATCCACCTG
CCTCTGCCTCTTGAGTGCTGGGATTAAAGGTGTGTGCCTTCACTGCCTGG
CCTGTGTTCTTAATCTTAAATGCAGTAAAATTCTAATTAAGATCACACTA
GTTTGGGGCTACTTGGTATTTTATGTTCAGGACATATAAATATTAAAATT
AAATAATGCCTGCCTTGGTGCCAGAATTCAGTTTATTGATGGCTACAAAA
ATCACCATGCCAACACTCAAGATTTCCAATTATTACTACACAAGACTGTA
CCTTAATTTCTATTCAAAACAAGCTATGACTACCTGCGTTTTCATACTTT
GTTTCACAGAAAGCTAACAAACCATACCCCAAACTGTAAGAAGCAACAGA
AATTTTATAGCGTATTTAGAGAATGAATGCAACCCACGGAGCTCTCCTAT
ATATTGGTGTGATGCATGTCTTAGTGTCCATAGACTAACAAATGAAAATC
GTAGTGGCATCCGTGAGTTACCATCTTCGACTATAGGTTGATGGTGTCCC
ATAAAGTCCCAAAGCTATTCAGGGGGGTAACTAAGTTGGTTTGTTTCCCT
TCCGCAAGCGAGTAAAAAACCCTCTTAATAATACACCCCTTCTATCACTC
TCTTTTCTGGTTATTTAGAATCTGTCTCTCCCTCCATAACATTTGTTCTC
TCTACCTTAATCTTTTTTGTCTCAC

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACTGAGGATACTGTCAAATATT
TCAAAGTTAGAACTAATGACAGATTGCTTGTTACTTATATTGGAATATTT
GATATAGGTTCTCCTGTGTCTTAATAATAAAATTAAATTTTTATTAAAGT
ACAAACAGTATAAAAGTATATATAAAGTCCCATGGTGTATATGATCAAAT
ATAATTGAGAAATATTGGTAGCAATGTATCATATTAAGTATACAACTAAA
CACTTTGAGAGCTAATATCAAATATAAGATGTTTAAATTACATTTAAACA
CATTGTGTTTTATAATTTAAATTTTGTGTGTATGTGTGTGTTACTGTGTG
TGTGCTTCACTGTGTGTATGTCTATATGTATATGTATATATCTGTATGTG
GGAATGTAGTCAGGAGTGGAAGGTCTGTGTATACTAAATATTTTATATTT
TTCTCTACAGCTGTGAGTCTAGTTTTTTTTGTACTCCCGCACACCTGGTT
GGTAACACAGTATCATACCATTTTCTCTCTGCAAGACTTCATTTTTTCTC
CTTTATATTTTTCTCCTTTCTCTCTATTGACTTAAAAATTTCTTTTCTTT
TTTCTTTTCTCTCACTTCTCTCTTCTTCCCTTTTTATCTCCTCTTTCTTC
TTTCTCTATTTACTCTTCGTCCTCTTACCTATTTCTTTCTATTTTTCTCA
ACTCACCATGTCTTTTCCATTTGACTTTTTTATTGTATGTTTTCCTATTC
CTTTACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_a09.b1 MSMg01no364_a09.b1 CHROMAT_FILE:
MSMg01no364_a09.b1 PHD_FILE: MSMg01no364_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:57 2005
         (520 letters)



>mm_chr17_59713199_59714118
          Length = 920

 Score =  926 bits (479), Expect = 0.0
 Identities = 506/515 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcactctgtattccaggctggccttgaactcagaaatccacctgcctctgcctctt 65
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcactctgtaaaccaggctggccttgaactcagaaatccacctgcctctgcctctt 265

                                                                       
Query: 66  gagtgctgggattaaaggtgtgtgccttcactgcctggcctgtgttcttaatcttaaatg 125
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 gagtgctgggattaaaggtgtgtgccatcactgcctggcctgtgttcttaatcttaaatg 325

                                                                       
Query: 126 cagtaaaattctaattaagatcacactagtttggggctacttggtattttatgttcagga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagtaaaattctaattaagatcacactagtttggggctacttggtattttatgttcagga 385

                                                                       
Query: 186 catataaatattaaaattaaataatgcctgccttggtgccagaattcagtttattgatgg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catataaatattaaaattaaataatgcctgccttggtgccagaattcagtttattgatgg 445

                                                                       
Query: 246 ctacaaaaatcaccatgccaacactcaagatttccaattattactacacaagactgtacc 305
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctacataaatcaccatgccaacactcaagatttccaattattactacacaagactgtacc 505

                                                                       
Query: 306 ttaatttctattcaaaacaagctatgactacctgcgttttcatactttgtttcacagaaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttaatttctattcaaaacaagctatgactacctgcgttttcatactttgtttcacagaaa 565

                                                                       
Query: 366 gctaacaaaccataccccaaactgtaagaagcaacagaaattttatagcgtatttagaga 425
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 566 gctaacaaaccataccccaaactgtaagaagcaacagaaattttataacgtatttaaaga 625

                                                                       
Query: 426 atgaatgcaacccacggagctctcctatatattggtgtgatgcatgtcttagtgtccata 485
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atgaacgcaacccacggagctctcctatatattggtgtgatgcatgtcttagtgtccata 685

                                              
Query: 486 gactaacaaatgaaaatcgtagtggcatccgtgag 520
           ||||| ||||| |||||||||||||||||||||||
Sbjct: 686 gactagcaaattaaaatcgtagtggcatccgtgag 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no364_a09.g1 MSMg01no364_a09.g1 CHROMAT_FILE:
MSMg01no364_a09.g1 PHD_FILE: MSMg01no364_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:58 2005
         (380 letters)



>mm_chr17_59878058_59878837
          Length = 780

 Score =  727 bits (376), Expect = 0.0
 Identities = 379/380 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgaggatactgtcaaatatttcaaagttagaactaatgacagattgcttgttactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aactgaggatactgtcaaatatttcaaagttagaactaatgacagattgcttgttactta 559

                                                                       
Query: 61  tattggaatatttgatataggttctcctgtgtcttaataataaaattaaatttttattaa 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 558 tattggaatatttgatataggttctcttgtgtcttaataataaaattaaatttttattaa 499

                                                                       
Query: 121 agtacaaacagtataaaagtatatataaagtcccatggtgtatatgatcaaatataattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agtacaaacagtataaaagtatatataaagtcccatggtgtatatgatcaaatataattg 439

                                                                       
Query: 181 agaaatattggtagcaatgtatcatattaagtatacaactaaacactttgagagctaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agaaatattggtagcaatgtatcatattaagtatacaactaaacactttgagagctaata 379

                                                                       
Query: 241 tcaaatataagatgtttaaattacatttaaacacattgtgttttataatttaaattttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcaaatataagatgtttaaattacatttaaacacattgtgttttataatttaaattttgt 319

                                                                       
Query: 301 gtgtatgtgtgtgttactgtgtgtgtgcttcactgtgtgtatgtctatatgtatatgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtgtatgtgtgtgttactgtgtgtgtgcttcactgtgtgtatgtctatatgtatatgtat 259

                               
Query: 361 atatctgtatgtgggaatgt 380
           ||||||||||||||||||||
Sbjct: 258 atatctgtatgtgggaatgt 239


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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