BAC Information

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BAC

Clone NameMSMg01-364I15
Chromosome17 (Build37)
Map Location 85,710,707 - 85,711,157
singlet/doubletsinglet
Overlap gene1700106N22Rik
Upstream geneThada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901
Downstream geneEG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228, Prkce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364I15.T7 (MSMg01no364_i15.b1)MSMg01-364I15.TJ (MSMg01no364_i15.g1)
ACCAG472713AG472714
length799801
length of high quality
(start - end)		479 (50 - 528)454 (78 - 531)
definitionCHROMAT_FILE: MSMg01no364_i15.b1 PHD_FILE: MSMg01no364_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:41 2005CHROMAT_FILE: MSMg01no364_i15.g1 PHD_FILE: MSMg01no364_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGATGAATACTGAATGGCAAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAG
ATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCCGTTCCT
CAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGG
GCATATATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACT
ATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTCCACAA
TGGAATACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGTAGGAGGGAACCCCACCCCCA
AGGAACTCGCACAATATGTACTCTCTGATAAGGGGAAATTAGCCCCAAAC
TTAGGTAACCCCTCAAATAATAATACACTTTGGCCAACGCCTGTAATTTT
CCTAAAAAAAGGAAAACCAAAGTGTGGAAACTTTTCTCCTTTCTTTAAAA
TGGGGAAAAAAACCACCCCGGGCAGTCGGTATTAGAAGAAAAAATTTGG

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCCGTTTCCTCTGTGAGTTA
AGTTTTTATGTGTTGTTGGAAATGAAGGCAACACCAGCAAAAGCGTTCTG
ATAACTTAGAATGACCTCATCAGCATGGCTGGGACATTCTGAATGTAATC
AAAGGGGCAAGTGAGAATAAAAAAATATTCTTTCACAGACGAGCCTGCCC
TGCCATGGGAATTCACAGCCTGTGCGCACAGAATGAATTTCCTACCCTGG
CAAACGTTGTTCCGATCATAACGGAGCCACCACCAGGAGGATGGTGGGTA
CCGCAGAGCTGTTCTGCAAGAGGTGTCGCGTGGCACATCAGTTCGTTCCG
AGCCAGTATCACTGACAGCCACGAGTCTACAGAAGCAGCCGGAGCTTGAG
GAAGACTCAGGATTGCTCACAGACAAATGAGAGACAGGAGAGTTGAGAAA
CAGCCTTCTGTGAACGGTTAAAGGTAAACTTTAAGATACCAGACTCTGTC
ATTTTGAAGGGGCATAATGAAAAAAAAATCAAAAATGTATTCCAAATTCT
GGTAATGGGGAGTCTTATTATCTAAAAGGATTGTGCCCTTGTATAGGGGG
GGATTTTTTTAATTCTGGGTCTTCTTTTTTATCATTAGATGTTTTTTTCC
TCGGAAAGGCTTTTTATAAGTGCTTTTAATATATTTCTTTCTCTCTATAC
TCTTTATTATCGATCTCCCTTTATATGCATCTTCTGCTATTATNTTTCCC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_i15.g1 MSMg01no364_i15.g1 CHROMAT_FILE:
MSMg01no364_i15.g1 PHD_FILE: MSMg01no364_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:41 2005
         (454 letters)



>mm_chr17_85710507_85711357
          Length = 851

 Score =  828 bits (428), Expect = 0.0
 Identities = 447/454 (98%), Gaps = 3/454 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgccgtttcctctgtgagttaagtttttatgtgttgttggaaatgaaggcaacaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tctgccgtttcctctgtgagttaagtttttatgtgttgttggaaatgaaggcaacaccag 592

                                                                       
Query: 61  caaaagcgttctgataacttagaatgacctcatcagcatggctgggacattctgaatgta 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 caaaaacgttctgataacttagaatgacctcatcagcatggctgggacattctgaatgta 532

                                                                       
Query: 121 atcaaaggggcaagtgagaataaaaaaatattctttcacagacgagcctgccctgccatg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 531 atcaaaggggcaagtgagaat-aaaaaatattctttcacagacgagcctgccctgccatg 473

                                                                       
Query: 181 ggaattcacagcctgtgcgcacagaatgaatttcctaccctggcaaacgttgttccgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggaattcacagcctgtgcgcacagaatgaatttcctaccctggcaaacgttgttccgatc 413

                                                                       
Query: 241 ataacggagccaccaccaggaggatggtgggtaccgcagagctgttctgcaagaggtgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ataacggagccaccaccaggaggatggtgggtaccgcagagctgttctgcaagaggtgtc 353

                                                                       
Query: 301 gcgtggcacatcagttcgttccgagccagtatcactgacagccacgagtctacagaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gcgtggcacatcagttcgttccgagccagtatcactgacagccacgagtctacagaagca 293

                                                                       
Query: 361 gccggagcttgaggaagactcaggattgctcacagacaaatgagagacaggagagttgag 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 292 gccggagcttgaggaagactcgggattgctcacagacaaatgagagacaggggagttgag 233

                                             
Query: 421 aaacagccttctgtgaacggttaaaggtaaactt 454
           ||||||||||||||||||  ||||||| ||||||
Sbjct: 232 aaacagccttctgtgaac--ttaaaggcaaactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 851
Length adjustment: 10
Effective length of query: 444
Effective length of database: 841
Effective search space:   373404
Effective search space used:   373404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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