Query= MSMg01no365_d09.b1 MSMg01no365_d09.b1 CHROMAT_FILE:
MSMg01no365_d09.b1 PHD_FILE: MSMg01no365_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:39 2005
(424 letters)
>mm_chr17_80682609_80683430
Length = 822
Score = 775 bits (401), Expect = 0.0
Identities = 417/423 (98%), Gaps = 2/423 (0%)
Strand = Plus / Plus
Query: 1 ggggtatgagtgaagattaatgaataacttgtgtaagaatggggacccatgcattgattt 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ggggtatgagtgaagattaatgaataac--gtgtaagaatggggacccatgcattgattt 258
Query: 61 atctgttctacacgtatttattgaaagcttatgtgccagatcttgaagatttgacagcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atctgttctacacgtatttattgaaagcttatgtgccagatcttgaagatttgacagcta 318
Query: 121 agacaaaacgcatgcctggtgaagcagctaactctctagaggatctggtagatggtaagc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 319 agacaaaacgcatgcctggtgaagcagctaactctctagagggtctggtagatggtaagc 378
Query: 181 gggtgtatagtcagtcagggctgctgtcacagaagagctaagcttactaaagctgtattt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gggtggatagtcagtcagggctgctgtcacagaagagctaagcttactaaagctgtattt 438
Query: 241 gggctcacagttctgacggctgggaagtacacagcacgtggtgtctgagcagatgacagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gggctcacagttctgacggctgggaagtacacagcacgtggtgtctgagcagatgacagt 498
Query: 301 cagagtctttgcactgcatctcggcagggcaggggcgaggagaaaggaagctaaaggaag 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cagagtctttgcactgcatctgggcagggcaggggcgaggagaaaggaagctaaaggaag 558
Query: 361 agtctaaacacaagggaatgcctcgctttataataactatcttgtgagactggtctctct 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 559 agtctaaacacaagggaatgcctcgctttataataactatctcgtgagactggtctctct 618
Query: 421 ccc 423
|||
Sbjct: 619 ccc 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 822
Length adjustment: 9
Effective length of query: 415
Effective length of database: 813
Effective search space: 337395
Effective search space used: 337395
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_d09.g1 MSMg01no365_d09.g1 CHROMAT_FILE:
MSMg01no365_d09.g1 PHD_FILE: MSMg01no365_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:39 2005
(606 letters)
>mm_chr17_80804813_80805819
Length = 1007
Score = 986 bits (510), Expect = 0.0
Identities = 522/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 82 tgtcagaagaaacaaaggccatccttaaaagtcttcaattctgtttttaaattttatttt 141
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1007 tgtcagaagaaacaaaggccatccttaaaagtcttcaattttgtttttaaattttatttt 948
Query: 142 ttgtgaatgtgtgtgttttgcctatgtaaatgtctatacaccatgtgtgtgcctggtgcc 201
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 ttgtgaatgtatgtgttttgcctatgtaaatgtctatacaccatgtgtgtgcctggtgcc 888
Query: 202 tgcagagaccagaagagggcagtagaccctgggatgggagtgagcttccatgtgggtgct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 tgcagagaccagaagagggcagtagaccctgggatgggagtgagcttccatgtgggtgct 828
Query: 262 ggatcctctagaggagcaacagttgaacatcagcctacacatttattttatttgaatata 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ggatcctctagaggagcaacagttgaacatcagcctacacatttattttatttgaatata 768
Query: 322 aggtataccatcccctcctcaccacattctgcagtggcttctgattctaccgtacataaa 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aggtataccatcccctcctcaccacattctgcagtggcttctgattctaccgtacataaa 708
Query: 382 attccaactcttagatgacccttcctcagactcactgtagtatcctgataatatgtagtt 441
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 707 attccaactcttagatgacccttcctcagactcactgtagtatcctaataatatgtagtt 648
Query: 442 cttggtgaaactaggaatagcacatgggcattcaaaccacagttactgctttatcagcag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cttggtgaaactaggaatagcacatgggcattcaaaccacagttactgctttatcagcag 588
Query: 502 aaatatgagagcaatatgtttggctgtaaatgtctaatagccacattttaaaaagcaaat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aaatatgagagcaatatgtttggctgtaaatgtctaatagccacattttaaaaagcaaat 528
Query: 562 ataacttaaagaatcctttgttaaacctagtattt-aaaaatgact 606
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 527 ataacttaaagaatcctttgttaaacctagtatttaaaaaatgact 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space: 594212
Effective search space used: 594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
