BAC Information

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BAC

Clone NameMSMg01-365P10
Chromosome17 (Build37)
Map Location 40,125,142 - 40,125,437
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043297, LOC100043300, EG668200, LOC672857, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365P10.T7 (MSMg01no365_p10.b1)MSMg01-365P10.TJ (MSMg01no365_p10.g1)
ACCAG473793AG473794
length7371,089
length of high quality
(start - end)
311 (41 - 351)---
definitionCHROMAT_FILE: MSMg01no365_p10.b1 PHD_FILE: MSMg01no365_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:38 2005CHROMAT_FILE: MSMg01no365_p10.g1 PHD_FILE: MSMg01no365_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTCTTTTACTTTGTTATGCTTTTTCCCCCAGGCATCTTCCTAGCTATAG
TGACTGCAACTTATTTTCTGGTTGTCTGCCTATTGTATATAGGACAGTTT
CTGATGTGGGTATGTTAGTTTTCTGTTCTTTCACTTGATGAAACTATTTG
TCTGTTTTATGAAACCAGTGGTAGAGTCTTCACAGACTCTTTTCTAAAGA
ATTATATCTGCATGCAAAGATGATCTGAATTCTTGTTGTCCTACTTGCAT
GTCTATTACTTTCCTGCCAATGTTCTAAGATTTCAGTCCTGACAATGAAC
AATATTAAAGAGAGCAGACACTATGATCTTGTTTCAGCCTTATTACTAAA
TATTTACATCCATCTTGATTTCAAATGCAAAGTAAATATAATAATGACGC
TTTGCAATGCATATAAATACTCTATATTTATAATTAACTGCTGAATTTTA
CACGTTTTATATTTTATACATATCTCAGTATGTTGATAGTATTTGAGTAC
TTGCTAGTATTGACTAAACATTACGATGATAATTTACTATCTTCCTCACC
ATCCTCAGTTAGTATATTTTACTATCCTTGCTGTACCATTCTTTACTCAG
ATTCTCTTTTCTTGCCACCTTGTTCCCCCCTTGAATCATTTTACCAGTTT
CCTCTTTCCCCCATCTTTTACTTTCCCCTTATATTCG
NCTTTTTTTTCCTNNCCTCTTTNTTATTATCCTGATAATTTTATAACATA
GAAAAAACTTCATTCTCATAGCCGCCACAATGCTATCCTCTTTTCTTCAT
TACTTAGTGGAGACACTATATATTCCTTCCGCGACATTTAAAGGAGAGTT
CTCAAGAAATACCAGCAGTCACCAGGCAGTGTGAACCATGGTATCTTAGA
TCACCTTTAGAGTAGATCTTTCTTATAGCCACATGATTCAGCTTCTAGGC
TTGTTAGTCTGGTGCGCAGCGTCCTATACTAGACTATACTGGTTCCGAGT
AAAGCGCATATACCTCTTCTCGCGAGTGTTTCGTGTTTACATGTTCTCGA
ATACTGAGTCTATACCCTTAATTTCCACTAACTCTTGTTATAAATTCACG
CAAACGAGAATTATAATGTCTATTCACACTTTATGCCCCATACTATCTGA
TTTCACCTGCGCTGGATAGCACGCGCAAGAACGAATATATGTTCGTTTGT
CCACCATATTTTCCTATAATTATTGAACTGCTGTGCTATTGAACGCACTC
CACATGAATATATCTCCTAGCCCATTTGATGTGTTGTTGTAAAAACTATC
CTCGCTTACGTTTGTATCACTGACGTTATAATAGCAGAGACGGTATCGTA
TATTTTTATACCCCTACTCTTCATCCTATATTTCCGTTCCGCCCCCTTTA
TCCTTTTCTGGTTTCGGACACCAATTTTATCATTTCCTCTGTTTATCTCA
TCAACCCTATTATTTTTCAACAAACTGTTTATACAACGCACTCTGTCATT
CTTTCACGCTTAAATCCCTTGCTTTTCATCATCCCTAACATCCATATATT
CCCATGTTAGTTGCCCAGCTTTCCCCGTCTCGCCTTGATATTAGTATCAC
TTAATCTACTTACCGTATTTTTGACCTTATTTAGCAATACCCCCATATGA
TTATTTATCAAAGCTGCATCGATTTCGTTGTTTTCTCCCCTTCTTTAACC
ACACTAATAAGCCATATCCCGCATTCCCGCAGAGAAAATATAAAAGAAAT
AATATATAATCTAGTTGCCNGCAGACATTATCGATATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_p10.b1 MSMg01no365_p10.b1 CHROMAT_FILE:
MSMg01no365_p10.b1 PHD_FILE: MSMg01no365_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:38 2005
         (311 letters)



>mm_chr17_40124927_40125637
          Length = 711

 Score =  480 bits (248), Expect = e-140
 Identities = 284/296 (95%)
 Strand = Plus / Minus

                                                                       
Query: 16  tttactttgttatgctttttcccccaggcatcttcctagctatagtgactgcaacttatt 75
           ||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||
Sbjct: 511 tttactttgttatgctttttcccccaggcatcttcgtggctatagtgactacaatttatt 452

                                                                       
Query: 76  ttctggttgtctgcctattgtatataggacagtttctgatgtgggtatgttagttttctg 135
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 451 ttctggttgtctgcctattgtatatgggacagtttctgatgtgggtaggttagttttctg 392

                                                                       
Query: 136 ttctttcacttgatgaaactatttgtctgttttatgaaaccagtggtagagtcttcacag 195
           ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||
Sbjct: 391 ttctttcacttgatgaaactagttgtttgttttatgaaacccgtggtagagtcttcacag 332

                                                                       
Query: 196 actcttttctaaagaattatatctgcatgcaaagatgatctgaattcttgttgtcctact 255
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tctcttttctaaagaattatatctgcatgcaaagatgatctgaattcttgttgtcctact 272

                                                                   
Query: 256 tgcatgtctattactttcctgccaatgttctaagatttcagtcctgacaatgaaca 311
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgcatgcctattacttccctgccaatgttctaagatttcagtcctgacaatgaaca 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)