Query= MSMg01no367_c19.b1 MSMg01no367_c19.b1 CHROMAT_FILE:
MSMg01no367_c19.b1 PHD_FILE: MSMg01no367_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:15 2005
(470 letters)
>mm_chr17_86017973_86018837
Length = 865
Score = 853 bits (441), Expect = 0.0
Identities = 458/467 (98%), Gaps = 7/467 (1%)
Strand = Plus / Minus
Query: 5 ggaattc-aaactttttttaaaaagatcttttctacattccgatgcagatctgggggcgc 63
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ggaattcaaaactttttttaaaaagatcttttctacattccgatgcagatctgggggcgc 606
Query: 64 ggcgccgggtacacaccactcaggagagctcaatgagggaggagtggaaaaaaagaagtt 123
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 605 ggcgccgggtacacaccactcaggagagctcaatgagggagaagtggaaaaaaagaagtt 546
Query: 124 gtgggagaatttaaacgtgaacccaactggaggctggagccaaaatggtcgcaggcccta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtgggagaatttaaacgtgaacccaactggaggctggagccaaaatggtcgcaggcccta 486
Query: 184 aatctcaagctcggatctttcttaggccttgctccgacagtgccaggttttaaagggccg 243
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 485 aatctcaagctcggatctttcttaggccttgatccgacagtgccaggttttaaagggccg 426
Query: 244 aggagtgcaaactcggtttgagggtgacaccgaatgtttgggttaggctaggggactata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aggagtgcaaactcggtttgagggtgacaccgaatgtttgggttaggctaggggactata 366
Query: 304 ctggctctttagcagggggcagctcaggggcctaaactcgctgaccagggcagaataatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctggctctttagcagggggcagctcaggggcctaaactcgctgaccagggcagaataatg 306
Query: 364 ttcaccctaaaaggtagatccgtcgagccccacttttggcggtctctctctctctctttc 423
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 305 ttcaccctaaaaggtagatccgtcgagccccacttttggcggtctctctctc------tc 252
Query: 424 tccaaacatcttcatctgcaccaggagtgcttttccgctcaactgca 470
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tccaaacatcttcatctgcaccaggagtgcttttccgctcaactgca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 865
Length adjustment: 10
Effective length of query: 460
Effective length of database: 855
Effective search space: 393300
Effective search space used: 393300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_c19.g1 MSMg01no367_c19.g1 CHROMAT_FILE:
MSMg01no367_c19.g1 PHD_FILE: MSMg01no367_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:15 2005
(509 letters)
>mm_chr17_85808925_85809833
Length = 909
Score = 907 bits (469), Expect = 0.0
Identities = 499/509 (98%)
Strand = Plus / Plus
Query: 1 actatctccgcagtgatgaccttgaacttccgaccttctgctccacctcccaagtgctga 60
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatctcggcagcgatgaccttgaacttccgaccttctgctccacctcccaagtgctga 260
Query: 61 gtttgtgaatcactttgtttcgctcaacactgtatttcctaactagttatattcagttgc 120
||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||
Sbjct: 261 gtttgtgaatcactttgtttctctcaacactgtatttcctaactcgttatattcggttgc 320
Query: 121 agatagagacataaaggttattgggttctgtatggaatgtgactcgtgtttactcttgta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 agatagagacataaaggttattgggttctgtatggaatgtgactcgtgtttagtcttgta 380
Query: 181 gtaatgacactttcagttttctgatttttcttttccttaaaatgggatttctccctgtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaatgacactttcagttttctgatttttcttttccttaaaatgggatttctccctgtag 440
Query: 241 ccctggctgtcctagaacttaatctgtagaccaggctggcctcgaactcagagatccatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctggctgtcctagaacttaatctgtagaccaggctggcctcgaactcagagatccatc 500
Query: 301 tgcctcctgagttctgggactaaaggtgtgtgccaccactgcctggttaggttttttatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcctcctgagttctgggactaaaggtgtgtgccaccactgcctggttaggttttttatc 560
Query: 361 ccttgtataatttcatttgattagaacagtcagcatgatgactacggagtgactgcattg 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 ccttgtataatttcatttgattagaacagtcagcatgatgactacagagtgactgcattg 620
Query: 421 ggaagcctctaatacttcaccatcatgcatgctgtagcctctgaattggggtatttattc 480
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 621 ggaagcctctaatacttcaccatcaagcgtgctgcagcctctgaattggggtatttattc 680
Query: 481 atcaattcctgttttgagattttattctg 509
|||||||||||||||||||||||||||||
Sbjct: 681 atcaattcctgttttgagattttattctg 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
