BAC Information

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BAC

Clone NameMSMg01-367F03
Chromosome17 (Build37)
Map Location 30,608,507 - 30,608,944
singlet/doubletsinglet
Overlap geneBtbd9
Upstream genePim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, EG623169
Downstream geneGlo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367F03.T7 (MSMg01no367_f03.b1)MSMg01-367F03.TJ (MSMg01no367_f03.g1)
ACCAG474821AG474822
length800739
length of high quality
(start - end)
402 (57 - 458)477 (50 - 526)
definitionCHROMAT_FILE: MSMg01no367_f03.b1 PHD_FILE: MSMg01no367_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:26 2005CHROMAT_FILE: MSMg01no367_f03.g1 PHD_FILE: MSMg01no367_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTATGCTACGCCAAAGGTTTAATGCCCTGCAGCAAATAAA
ATAATTAAAACTTAAATTAAAAATTTGGACCTAAGGCCTGGAGAGATGGC
TCAGAGGTTAAGAGCACCGACTGCTCTTCCAAAGGTCCAATTCCCAGTAA
CCACATGGTGGCTCACAACCACCTGTAATGGGGATCCCATGCCCTCTTCT
GGTGTGTCTGAAGACAGCAACAGTGTACTCACATACAGGAAATAACTAAA
TAAATCGTGAAGAAAAAAAAATTGGACCTAAAATTCTCTAAGAGTTTATC
TCAAGCATTCACACTCTACTGACCTCAGGAATACAGCATAGCCTGGGGCA
GAGGCAAGCCTTTCATCCCAGCACTCAGGAGGAAGAGGCAGGTGGATCTC
TGTGAGTTCTAGGACAGCCTGGTCTGAGTTCAGGATAAAGGTTAACAGAT
ATACAGAGATAGATAGATAGATAGAGACATAGAGATAGAGACAGATATTC
AGTATATATTTCACCTTCTTTCCTCTTTTTCTTCCTCTCCCTCCCCTCCT
TTTTTCTCTTCTTTTTTTTCCCTTCTTCTCCTCACTTTTTTTCTTCTTTT
TCCCCATATTTTTTATTAATTTCCTTATTTCCCTCCCTCCCTTTTTTTCC
CCCCCTTCTTTTTTTCCTCCCCACACTTTTTTTCTCCTCCCCCGCCCCTC
CCCCTTTTTTTTCCCTTTTTCCTCTTCCTCCCATTTCTTTTTTCTCCACT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
TCTCCTTCTCTTTCCCAAGGACAGCTCTAGTTTACCTCCTCCTCTTCCTC
CACTCCCTCCTCTCCTCCTCCACTCCCTCCTCCTCTTCCTCCACTCCCTC
CTCTTCCTCCACTCCCTCCTCTCCTCCTCCTCACCACAATCCTTTCCAAG
CAGACCAGTTGGCAAGACCAGGGCCCACGCTTGCTTAGCAATTTGCTCAG
AGCGGCACCCTCATCTCGTTTCTCCACAGCCTTCCAAGCTTCGCTTCTTT
TTGCCCGTGACTCCTATACACCTGGACCTGGGCCTCTCAAGGAAAATATC
AACAGCTCTCAGTCTCTGCCTCGGGCTGTCTGCCAGAGAACCCAGGATAA
GAGCCTAGGTTTAGAGAAATTCATCCCTGATGAAATTAATAAGAAATCAT
TAAAATGTACACTGCCTAACTATTTAAGAGTCAAAATAATAAATCCTCAG
AGAAAGTAAGAATACTGAGTACCAGATAACTATAAGGACCAGGGCAAATA
AACACATAAAATGTCATCCAACAACAATGTGCTTCAGAAAGCCATGACTA
TTACATACAGAGTCCTCTGCAGTCATGGCCCATTCACCTATTTTCTGAAG
AAAAGAACAGAGATTTTCTTTTATCAATTAATGGTAAGGTTGGGGGAATC
ATGGCCATAGGGGAAAATTCGGGTTTAAATGTTCAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_f03.g1 MSMg01no367_f03.g1 CHROMAT_FILE:
MSMg01no367_f03.g1 PHD_FILE: MSMg01no367_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:26 2005
         (477 letters)



>mm_chr17_30608268_30609144
          Length = 877

 Score =  806 bits (417), Expect = 0.0
 Identities = 434/441 (98%), Gaps = 5/441 (1%)
 Strand = Plus / Plus

                                                                       
Query: 39  cctcctct--tcctccactccctcctctcctcctccactccctcctcctcttcctccact 96
           ||||||||  ||||||||||||||||||  |||||||||||||||| ||| |||||||||
Sbjct: 240 cctcctctcctcctccactccctcctct--tcctccactccctcct-ctcctcctccact 296

                                                                       
Query: 97  ccctcctcttcctccactccctcctctcctcctcctcaccacaatcctttccaagcagac 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ccctcctcttcctccactccctcctctcctcctcctcaccacaatcctttccaagcagac 356

                                                                       
Query: 157 cagttggcaagaccagggcccacgcttgcttagcaatttgctcagagcggcaccctcatc 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cagttggcaagaccagggcccacgcttgcttagcaatttgctcagagcggcaccctcatc 416

                                                                       
Query: 217 tcgtttctccacagccttccaagcttcgcttctttttgcccgtgactcctatacacctgg 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tcgtttctccacagccttccaagcttcgcttctttttgcccgtgactcctatacacctgg 476

                                                                       
Query: 277 acctgggcctctcaaggaaaatatcaacagctctcagtctctgcctcgggctgtctgcca 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acctgggcctctcaaggaaaatatcaacagctctcagtctctgcctcgggctgtctgcca 536

                                                                       
Query: 337 gagaacccaggataagagcctaggtttagagaaattcatccctgatgaaattaataagaa 396
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 537 gagaacccaggataagagcctaggtttagcgaaattcatccctgatgaaattaataagaa 596

                                                                       
Query: 397 atcattaaaatgtacactgcctaactatttaagagtcaaaataataaatcctcagagaaa 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atcattaaaatgtacactgcctaactatttaagagtcaaaataataaatcctcagagaaa 656

                                
Query: 457 gtaagaatactgagtaccaga 477
           |||||||||||||||||||||
Sbjct: 657 gtaagaatactgagtaccaga 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)