BAC Information

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BAC

Clone NameMSMg01-367F10
Chromosome17 (Build37)
Map Location 59,487,211 - 59,487,663
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367F10.T7 (MSMg01no367_f10.b1)MSMg01-367F10.TJ (MSMg01no367_f10.g1)
ACCAG474835AG474836
length790765
length of high quality
(start - end)
483 (50 - 532)452 (58 - 509)
definitionCHROMAT_FILE: MSMg01no367_f10.b1 PHD_FILE: MSMg01no367_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:28 2005CHROMAT_FILE: MSMg01no367_f10.g1 PHD_FILE: MSMg01no367_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTACCTTAGGAATACCGAATGGCAGAGAAGCACCTGAAAAT
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATTCTGGCGTGGATTTGGAGAAAGAGGAATACTCCTCCATTGTTG
GTGGGATTGCAGACTTGTACAACCACTCTGGAAACCAGCCTGGACAATTG
GACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGGGCATATATCC
AGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTGTGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACGCAGATGCCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTA
CTCAGCTATTCAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGG
ACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCG
CACAATATGTACTCACTGATAAGTGGATATTAGCCCCCAACCCTAGGATA
CCCAGATATAAGAAACAATTTGCCAACCCATGAAACTTCCAAAAAATGAA
GACTGAAGGGGGGACCTATGCCCCTCCCTAAAATTGGGGAAATAACCCCC
CGGGAGGAGGTACCGCGCACAATTTGATTTGAAAATAAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGAGGAAAAGGAGATTCATAAAAGGATCATACTTTATTTTTT
ACATTCAGAAACATTTTATTTATTATTCAAACATACAGTGAAGTACAGAG
CACACATAGATTCTAAGGAGTGAATTAGAAAGTCCTTTTTTATTTTACTC
CTCTCCCCAAACAGGAAAGTAACCATCTCCTCCACCTTGGCCAAAATCAT
AGCTATGACTGCATTGTAACTTCTATTTCTTGCTGATTTGTAATACTGAT
TATCTTTTAAATTTTATTACTCCGAATTGCCCATTTCTATGTTTTGAATG
TTCTTAGATTTCTATTCTTTTTTTTTTGTTTTTGTTTTGGTTTTTTTGGT
TTTTTGGTTTGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC
ACTTTGTAGATCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCC
TCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTCCCGGCTTAGATTT
CTATTCTTAATGATAAGGAAAAGGACTTTTACTAACCTAATTGAAAAGGT
AAATATAAAAGAAAAAAGGGAAAACATCTTTCTCTATTTTTTTCTCACCT
GGCGGGGAGAATTCTTTCCTTCAAGAATTGGAAAATAATTACCAATTTTA
ATTTTAGGTGGTTACTTTTTCCTGGAGAGGGGGGGAAATCACAATCGGGT
TTTTTTCTTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_f10.g1 MSMg01no367_f10.g1 CHROMAT_FILE:
MSMg01no367_f10.g1 PHD_FILE: MSMg01no367_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:28 2005
         (452 letters)



>mm_chr17_59487011_59487864
          Length = 854

 Score =  851 bits (440), Expect = 0.0
 Identities = 450/454 (99%), Gaps = 3/454 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaggaaaaggagattcataaaaggatcatactttattttttacattcagaaacatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaggaaaaggagattcataaaaggatcatactttattttttacattcagaaacatttt 260

                                                                       
Query: 61  atttattattcaaacatacagtgaagtacagagcacacatagattctaaggagtgaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttattattcaaacatacagtgaagtacagagcacacatagattctaaggagtgaatta 320

                                                                       
Query: 121 gaaagtccttttttattttactcctctccccaaacaggaaagtaaccatctcctccacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagtccttttttattttactcctctccccaaacaggaaagtaaccatctcctccacct 380

                                                                       
Query: 181 tggccaaaatcatagctatgactgcattgtaacttctatttcttgctgatttgtaatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggccaaaatcatagctatgactgcattgtaacttctatttcttgctgatttgtaatact 440

                                                                       
Query: 241 gattatcttttaaattttattactccgaattgcccatttctatgttttgaatgttcttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattatcttttaaattttattactccgaattgcccatttctatgttttgaatgttcttag 500

                                                                       
Query: 301 atttctattcttttttttttgttttt--gttttggtttttttggttttttggtttgacag 358
           |||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||||
Sbjct: 501 atttctattcttttttttttttttttttgttttggtttttt-ggttttttggtttgacag 559

                                                                       
Query: 359 ggtttctctgtgtagccctggctgtcctggaactcactttgtagatcaggctggcctcga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggtttctctgtgtagccctggctgtcctggaactcactttgtagatcaggctggcctcga 619

                                             
Query: 419 actcagaaatcagcctgcctctgcctcccaagtg 452
           ||||||||||||||||||||||||||||||||||
Sbjct: 620 actcagaaatcagcctgcctctgcctcccaagtg 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 854
Length adjustment: 10
Effective length of query: 442
Effective length of database: 844
Effective search space:   373048
Effective search space used:   373048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)