Query= MSMg01no367_h13.b1 MSMg01no367_h13.b1 CHROMAT_FILE:
MSMg01no367_h13.b1 PHD_FILE: MSMg01no367_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:39 2005
(492 letters)
>mm_chr17_84678558_84679448
Length = 891
Score = 922 bits (477), Expect = 0.0
Identities = 487/491 (99%), Gaps = 3/491 (0%)
Strand = Plus / Plus
Query: 1 tcctcttc-cataattgctggaagtggagatagcaaacacttcaaaggcagaccgcatac 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcttcacataattgctggaagtggagatagcaaacacttcaaaggcagaccgcatac 260
Query: 60 gtgtgcatgcatgcatttgtgtgcgtgcatgtgcctgtgtcttgggaaagccagggagaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgcatgcatgcatttgtgtgcgtgcatgtgcctgtgtcttgggaaagccagggagaa 320
Query: 120 agcccagtaacatctgtcatttccagtcactttaaggttggccaggttgcaggattggtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcccagtaacatctgtcatttccagtcactttaaggttggccaggttgcaggattggtt 380
Query: 180 ttctgcttcaggcatactgactgaagcctcaggtagaccagtttctcaggagaacccttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgcttcaggcatactgactgaagcctcaggtagaccagtttctcaggagaacccttc 440
Query: 240 ttattgtttgggcttggtgggcacatgtatttgcctatgccatttgtacagagtccaatg 299
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ttattgtttgggcttggtgggcacatgtatttgcctatgccatttgta--gagtccaatg 498
Query: 300 aaggggctcttattgccagtaacacttgtcacagaccttagaggagtgtgggctctaggc 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 499 aaggggctcttattgccagtaacacctgtcacagaccttagaggagtgtgggctctaggc 558
Query: 360 aatatcttaatgacacttgagttccttagctgggtcatcctcaagaagatcttgtgctct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aatatcttaatgacacttgagttccttagctgggtcatcctcaagaagatcttgtgctct 618
Query: 420 tttctggtcttcttggtaccagttatgcctgtggtgcatatacatacatgcaggcaaaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttctggtcttcttggtaccagttatgcctgtggtgcatatacatacatgcaggcaaaac 678
Query: 480 actcataccca 490
|||||||||||
Sbjct: 679 actcataccca 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_h13.g1 MSMg01no367_h13.g1 CHROMAT_FILE:
MSMg01no367_h13.g1 PHD_FILE: MSMg01no367_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:39 2005
(438 letters)
>mm_chr17_84839223_84840061
Length = 839
Score = 735 bits (380), Expect = 0.0
Identities = 398/404 (98%), Gaps = 2/404 (0%)
Strand = Plus / Minus
Query: 37 tctt-aaaaatataattttaaacattttattcatttatttaggggacaggtgtgtatccc 95
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tcttaaaaaatataattttaaacattttattcatttatttaggggacaggtgtgtatccc 777
Query: 96 atggtgcaatcatggaggatagaggtcagtttgcaggagttggttctctccatttgccat 155
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 atggtgcaatcatggaggttagaggtcagtttgcaggagttggttctctccatttgccat 717
Query: 156 gtagatcctgggaatagacttaggttgtcaggcttggtgatgcacaccctaactcgccaa 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gtagatcctgggaatagacttaggttgtcaggcttggtgatgcacaccctaactcgccaa 657
Query: 216 gttgtcacaccaaccccagcttgctcagcgttggtgttcttagagcgtaggtggtgtgaa 275
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 656 gttgtcacaccaaccccagcttgctcagcgttggggttcttagagtgtaggtggtgtgaa 597
Query: 276 gaaagtgttggtgatgggggaaagaagca-ccatgaaatggtaatctcatgagtagctta 334
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 596 gaaagtgttggtgatgggggaaagaagcacccatgaaatggtaatctcatgagtagctta 537
Query: 335 tctgaatcagacagagtgcatctatggtgaggaattggtaaggtgtaaaattgactatca 394
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tctgaatcagacatagtgcatctatggtgaggaattggtaaggtgtaaaattgactatca 477
Query: 395 ttttgcaggttcacaccaatttaaaggaaatgggaaaactggtt 438
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttttgcaggttcacaccaatttaaaggaaatgggaaaactggtt 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 839
Length adjustment: 9
Effective length of query: 429
Effective length of database: 830
Effective search space: 356070
Effective search space used: 356070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
