Query= MSMg01no367_i02.b1 MSMg01no367_i02.b1 CHROMAT_FILE:
MSMg01no367_i02.b1 PHD_FILE: MSMg01no367_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:41 2005
(535 letters)
>mm_chr17_66503804_66504738
Length = 935
Score = 787 bits (407), Expect = 0.0
Identities = 513/569 (90%), Gaps = 42/569 (7%)
Strand = Plus / Plus
Query: 4 ggaattcttataatatcaccatcaagacttaagaagtcatctatttgtctaaaaacaaac 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattcttataagatcaccatcaagacttaagaagtcatctatttgtctaaaaaca--- 264
Query: 64 aaacaaaaaacaaaaattaaagtgtagtgtttgtttgtggaactttccattaaatgttta 123
|||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 aaacaaaaca-aaaaattaaagtgtagtgtgtgtttgtggaactttccattaaatgttta 323
Query: 124 tttcctttttcaagacatttagtt----------------tctccctcccctacttc--- 164
|||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 324 tttcctttttcaagacatttagtttctccctcccctcctctctccctcccctccttctcc 383
Query: 165 -tct--ttccccctctctcc--ccctccctcttttgcctccctctccat---------ct 210
||| ||||||||||| || ||||||||| ||||||||||||||| | ||
Sbjct: 384 ttctccttccccctctccccctccctccctcatttgcctccctctccgtccctctcccct 443
Query: 211 ctctc-ccccatcccatctctctctctc-ctctctctttctctctctctctctctct--c 266
||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |
Sbjct: 444 ctctctccccatcccatctctctctctctctctctctctctctctctctctctctctcac 503
Query: 267 tctctctctctctctctctctctctttctgtgtctctatctctttgtaagctgtgcatgt 326
||||||||||||||||||||||||| ||| | ||||| ||||| ||||||||||||||||
Sbjct: 504 tctctctctctctctctctctctctctctctctctctctctctctgtaagctgtgcatgt 563
Query: 327 aagtgcaggcaattatgatgaccagtagagggctctgggtcacctaggagctggagggag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagtgcaggcaattatgatgaccagtagagggctctgggtcacctaggagctggagggag 623
Query: 387 tagtgattgttagtgtctagacatgagtgctgggatctaaaataagataatctcaaagaa 446
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagtgatggttagtgtctagacatgagtgctgggatctaaaataagataatctcaaagaa 683
Query: 447 aaaacagtctaagctcttaccatgagccctttctccagacggccccactgtgcttcaaga 506
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaa-cagtctaagctcttaccatgagccctttctccagacggccccactgtgcttcaaga 742
Query: 507 gtggctattggtgagctgcacttgactgt 535
|||||||||||||||||||||||||||||
Sbjct: 743 gtggctattggtgagctgcacttgactgt 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 131
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_i02.g1 MSMg01no367_i02.g1 CHROMAT_FILE:
MSMg01no367_i02.g1 PHD_FILE: MSMg01no367_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:41 2005
(242 letters)
>mm_chr17_66623096_66623737
Length = 642
Score = 460 bits (238), Expect = e-134
Identities = 241/242 (99%)
Strand = Plus / Minus
Query: 1 tgagagttgggaagttacaggcggtctgctccgtgactgagcccacaatcagaaaagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgagagttgggaagttacaggcggtctgctccgtgactgagcccacaatcagaaaagggg 383
Query: 61 ccaggctcaaggaccaaattatggactagagaaggctttgtgctctaaacaaatgagggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccaggctcaaggaccaaattatggactagagaaggctttgtgctctaaacaaatgagggt 323
Query: 121 gtattggagaaagggcagatcccagcctacgggagatgagcagatacagttctatcaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtattggagaaagggcagatcccagcctacgggagatgagcagatacagttctatcaaga 263
Query: 181 tgagttgcagctcactacacagaggaaacttttcggtcaaatttcaacatggcctgaggc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgagttgcagctcaccacacagaggaaacttttcggtcaaatttcaacatggcctgaggc 203
Query: 241 ag 242
||
Sbjct: 202 ag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
