BAC Information

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BAC

Clone NameMSMg01-368B04
Chromosome17 (Build37)
Map Location 33,640,734 - 33,641,228
singlet/doubletsinglet
Overlap genenone
Upstream geneEG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953
Downstream geneAdamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368B04.T7 (MSMg01no368_b04.b1)MSMg01-368B04.TJ (MSMg01no368_b04.g1)
ACCAG475389AG475390
length1,124733
length of high quality
(start - end)		---495 (71 - 565)
definitionCHROMAT_FILE: MSMg01no368_b04.b1 PHD_FILE: MSMg01no368_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:25 2005CHROMAT_FILE: MSMg01no368_b04.g1 PHD_FILE: MSMg01no368_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCACACAGCTGATTCGGTGCGTGGATACTCCTACGATGACAGATTCTCTC
GGGGAGTGGGTGCGGCTGGGAGTCACCATTACCTCTCTTCCCAANACGAG
GCAGCAGCAATCAGTAACTCTCACACCACNCANACANNNGGCTGCTGTTT
TCTTGTTGGCTGTAGATGTGGGTATTGAGCATGAGTCGAATATTGGTACT
TGTTGTCGCTCCTCTCCTCCACAGCTGATCCTCTTGTTCCACTCAGGTGT
CCTCGTTCTGGCTTCACTAGTATCTGACCTCGGTCGATTCAAATCCTACT
AGTACTATTGTCTCAGTATAGTGGACCTGGACAATCGTGGTCCGTTTCTA
CCTTTACACCTGTATTCAATCTCATGTGTCGACCGTATAATTCACCTATG
CACTTATGTGAGTATCACATTGTAACTTGTATTCTCTTCGCCCCTCTCTT
CTCTTAAACCAGCTGTAGAGAACAACGCAACGTCAAGACTCTGACAACAC
CAATATCACGCGGCAGAANATATGATTGAATCATAACGAATGTTAGAATA
CGTTGTGTGTTGAAAAAGCATGGTGTGTGTGTTGTTTCTTGATAGNATGG
TCGCAAGAGGCAACGATTGGTATGAGAATCGAACGTGTCTCAACTTGCTA
CTACGAGTCACAACGTCTACAACTGACGACAAGCTGTACGTAACTCGCCT
CTATCCTGGTTAAACCCGCTGTACTCTGTCACAATAGTCCTTATACACAG
AGACCGTGTAGTTGTCACATCGAATGTCANATCATGGGTCTGTCCCGCCG
CACTGAGTCCGTGATTTTTAGTCTCGCATTGCTGTTCAGTTCCGTAGCCG
CGGTGCGCAGTCANTCTCTCGACTCATTTTCTGTGAAATAATAGCCCCAC
CTTCGCCTGTTCCTTACGGCTCTCTCTTNCAATGCTTCTTACTCGCCCGT
GATTTCTCATGGAGTATATGCGTGTGCATCACACTGTCGTCTACAACTCA
TATGTCAATCTGTCATCTTAGTTGTGATCGTTGGCNAAGTTTANGAACAA
TCCGTCGCTCCACGTCGTANCAATAGCTGTGCCGACTCGTTGTGGTTGCG
CAGTTATGTGTCGATATACACCAG

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGGTCAGGCTAGATCTTACTGGAGGAAGC
TAAACAATGTCAGAGCCCTTGGAATGGTGGGATGTCAGGGAGGGCACTGT
GTTTCGGAGGAGTTAGGGACTTGCAAGAAATTGGATGCATAAACAAGGCT
GATCTGGGGAAGATAAACAAACTGGGCTGGTTCCCCTAAAAAGGACAGCC
CCCAGGAGCGGGCAGCAGACAGGAACTTAAGCCAAGATGCAACCATGAGA
ACAGAGGCCCTGGGAATTCACAGACATCTCAGGGAGGGCACTGGGCTCCC
TCGCAGGCAGGCTGTGGGAGAGAGGCAGGCGCCAAATCTCTGATTGACTC
TGGCTTGATGGCTGGGTAACATCTGTTATACAAAAGAGCTGTCCCCAGCC
AGAGAGCCACAACCTCAGCAAGCCTTTCAAACACCCAGCAGAGAGGGTTG
GGGGTTAAATAGTGTTAGAGTCTTTCTTGGAGTCCTGGGCTTGGCTACAC
ATCAGACACACCCCANAATACACAAGTCTACCACACATAATGATAACCTA
ACATTTCAGGCATGCTCAGTATATGCCATCACTTCATTTTTTTACATTTC
TTTACTTATGTAGNATGTGTGGATGAGAGAGAGAAAAAGGTGTGTGTGTG
TGTGTTGTTTNTNNNNTNNTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_b04.g1 MSMg01no368_b04.g1 CHROMAT_FILE:
MSMg01no368_b04.g1 PHD_FILE: MSMg01no368_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:25 2005
         (495 letters)



>mm_chr17_33640534_33641428
          Length = 895

 Score =  949 bits (491), Expect = 0.0
 Identities = 494/495 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggtcaggctagatcttactggaggaagctaaacaatgtcagagcccttggaatggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggtcaggctagatcttactggaggaagctaaacaatgtcagagcccttggaatggtgg 260

                                                                       
Query: 61  gatgtcagggagggcactgtgtttcggaggagttagggacttgcaagaaattggatgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtcagggagggcactgtgtttcggaggagttagggacttgcaagaaattggatgcat 320

                                                                       
Query: 121 aaacaaggctgatctggggaagataaacaaactgggctggttcccctaaaaaggacagcc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacaaggctggtctggggaagataaacaaactgggctggttcccctaaaaaggacagcc 380

                                                                       
Query: 181 cccaggagcgggcagcagacaggaacttaagccaagatgcaaccatgagaacagaggccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaggagcgggcagcagacaggaacttaagccaagatgcaaccatgagaacagaggccc 440

                                                                       
Query: 241 tgggaattcacagacatctcagggagggcactgggctccctcgcaggcaggctgtgggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggaattcacagacatctcagggagggcactgggctccctcgcaggcaggctgtgggag 500

                                                                       
Query: 301 agaggcaggcgccaaatctctgattgactctggcttgatggctgggtaacatctgttata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaggcaggcgccaaatctctgattgactctggcttgatggctgggtaacatctgttata 560

                                                                       
Query: 361 caaaagagctgtccccagccagagagccacaacctcagcaagcctttcaaacacccagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaagagctgtccccagccagagagccacaacctcagcaagcctttcaaacacccagca 620

                                                                       
Query: 421 gagagggttgggggttaaatagtgttagagtctttcttggagtcctgggcttggctacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagggttgggggttaaatagtgttagagtctttcttggagtcctgggcttggctacac 680

                          
Query: 481 atcagacacacccca 495
           |||||||||||||||
Sbjct: 681 atcagacacacccca 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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