BAC Information

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BAC

Clone NameMSMg01-369A06
Chromosome17 (Build37)
Map Location 44,338,929 - 44,339,347
singlet/doubletsinglet
Overlap geneClic5
Upstream geneGpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4
Downstream geneRunx2, Supt3h, 4930564C03Rik, EG210562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369A06.T7 (MSMg01no369_a06.b1)MSMg01-369A06.TJ (MSMg01no369_a06.g1)
ACCAG476105AG476106
length819783
length of high quality
(start - end)
---419 (76 - 494)
definitionCHROMAT_FILE: MSMg01no369_a06.b1 PHD_FILE: MSMg01no369_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:37 2005CHROMAT_FILE: MSMg01no369_a06.g1 PHD_FILE: MSMg01no369_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACAACCGCTAAACGACTACTAAATCAACAAAACCGCGGAATCTCCTATG
TTCTACCAAAAAGTGAATGGAAAAGAAATTCATTGTGTTCAAACAAATGC
AGCCTTACCAACTTTGGGTTGTTTTTGGTTTGGCTTGGGATTTTCTTCTT
CGCCGGCCCTGCTCCCCGCCCCTCTCCCCCACTCCCATCCCCCCCTCTCC
CCCCCTACCACACCAAACAAACACAAAAAAAAAATACACCCCCACACCTC
CAAATAAAACCAACATCACAAAAAACCACACCCCCCAACACTTTTATTTC
CAAAACCCCAAAAAACACCAAAAAACCACACACCCCCCCCCACCCAAAAC
AAAAAAAAAAAAAAACCAAAAAACAACAAACCAACCCAACCAAAAAAAAA
ACAAAATAACACAAAACTCCAATACAAAACACACAATAAACCACAAAAAT
ACCACTATAACCACCCAACAACAAAAAAAAAACAACACACAAACAAACAA
CACAACAAACAACAAAAAAACAAAAAAAACAAAAAAAATAAAATAACAAA
CAACACAACACACAAAATACCCCCACAAATATACCCCAACATCTTCATCA
ACACACTCCACTAACCTCCTTACAAACAACACAACACACACAAACAAACC
AAACACATATAACCACCCACATACTACCCACCCCACCCCCCCACCCCCCT
CATTAATCCCCCCAACTCACCCAAAATATCAAAATAAAATAACCACCACC
ACCAACACACACACAAACCACCCACACCCAAAACAACACAACTATAAGAA
TATCATCCCCCCCCCCCCN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGTTTGTTCTCCCTCATTGATGC
CTAATGATGAGGAGAAGTGGCAAACATTATTGTAAGGTTCATAGAGTTCA
GGGAAGCCAACTACACCAAGCATAGGTGGCCATGACCGTGACGCTACAGC
AACCTTCCTATGCAGGTGGCTTTTCATAATCAGTCAATTCAGTGACATCA
GTAGGGGCTGGTGAACCATGGCCAGATAATTAAGCACCTCTCTCTTGGAA
TGTCTCAGTTGTTCAGAGATGCCTCATGACTTGCTAGGGGATGACCTGCA
TTCCCCTCAAATTCAAATGTTGAAACTTTACCTTGAATAGCATTAGGAGA
TAGGAATTTGGGGAGAAATTTAGGTCAGGAGAGAGCCTCTAGGGATGGCC
ATCCCATCAGTTGAGAATACAATCCAAGCATGCCGATTGTGAACCAGAAA
GCAGACCCTCACCAGGCATCTAATCTGCCAGTGCCTTTACCTTGGACTTC
CAACTTCTCCAGTACTAACCAATACGGNTCTCTTGTTTATAAACTCTCCA
ATTCATCATCTGGGGTAAGACCCTTAACCACAGGCCCCTCTACCTTTCCA
AAAACCTCTAAAGAAGAAAATAAGGTTTTAACCCCTACCCCACCGGATGT
TTTTACCCCTTTAACGAACACACGCTGGTATTTTTTCTTCCACCTTTTGA
TTTCCACCACCCCCTCCCTTCTTTTTATTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_a06.g1 MSMg01no369_a06.g1 CHROMAT_FILE:
MSMg01no369_a06.g1 PHD_FILE: MSMg01no369_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:37 2005
         (419 letters)



>mm_chr17_44338877_44339695
          Length = 819

 Score =  810 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtttgttctccctcattgatgcctaatgatgaggagaagtggcaaacattattgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttggtttgttctccctcattgatgcctaatgatgaggagaagtggcaaacattattgtaa 412

                                                                       
Query: 61  ggttcatagagttcagggaagccaactacaccaagcataggtggccatgaccgtgacgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggttcatagagttcagggaagccaactacaccaagcataggtggccatgaccgtgacgct 352

                                                                       
Query: 121 acagcaaccttcctatgcaggtggcttttcataatcagtcaattcagtgacatcagtagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 acagcaaccttcctatgcaggtggcttttcataatcagtcaattcagtgacatcagtagg 292

                                                                       
Query: 181 ggctggtgaaccatggccagataattaagcacctctctcttggaatgtctcagttgttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ggctggtgaaccatggccagataattaagcacctctctcttggaatgtctcagttgttca 232

                                                                       
Query: 241 gagatgcctcatgacttgctaggggatgacctgcattcccctcaaattcaaatgttgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gagatgcctcatgacttgctaggggatgacctgcattcccctcaaattcaaatgttgaaa 172

                                                                       
Query: 301 ctttaccttgaatagcattaggagataggaatttggggagaaatttaggtcaggagagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ctttaccttgaatagcattaggagataggaatttggggagaaatttaggtcaggagagag 112

                                                                      
Query: 361 cctctagggatggccatcccatcagttgagaatacaatccaagcatgccgattgtgaac 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 cctctagggatggccatcccatcagttgagaatacaatccaagcatgccgattgtgaac 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)