Query= MSMg01no369_f03.b1 MSMg01no369_f03.b1 CHROMAT_FILE:
MSMg01no369_f03.b1 PHD_FILE: MSMg01no369_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:01 2005
(364 letters)
>mm_chr17_9039542_9040306
Length = 765
Score = 667 bits (345), Expect = 0.0
Identities = 360/365 (98%), Gaps = 1/365 (0%)
Strand = Plus / Plus
Query: 1 actaagcactgttagtctgagaagcctattggttggcaccagacacatctggaagggggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaagcactgttagtctgagaagcctattggttggcaccagacacatctggaagggggg 260
Query: 61 -caggtcattggcagttaccatagcatactttaaggtaattattttatcccttttaaaga 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggtcattggcagttaccatagcatactttaaggtaattattttatcccttttaaaga 320
Query: 120 tggaatttgttttgacttcttctctacccccttctaaattcaacctgagtcgtcttccta 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaatttgttttgacttcttctctacccccttctaaattcaacctgagtcgtcttccta 380
Query: 180 ttctggagtaaacagcttccacaggcacacaaagaataatgagatggaggttggcatcac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctggagtaaacagcttccacaggcacacaaagaataatgagatggaggttggcatcac 440
Query: 240 agaacaggtctatctgaagtgagcctgattctttttaaagatatgattcagaacctctat 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 agaacaggtctatctgaagtgagcctgattctttttaaagatatgattcagaacttctat 500
Query: 300 caagcatgtgcttggcttacgaaaaagaatgctaaactacccttctttgcagatttcatg 359
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagcatgtgcttgtcttaggaaaaagaatgctaaactacccttctttgcagatttcatg 560
Query: 360 aatct 364
|||||
Sbjct: 561 aatct 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 765
Length adjustment: 9
Effective length of query: 355
Effective length of database: 756
Effective search space: 268380
Effective search space used: 268380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_f03.g1 MSMg01no369_f03.g1 CHROMAT_FILE:
MSMg01no369_f03.g1 PHD_FILE: MSMg01no369_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:01 2005
(310 letters)
>mm_chr17_9216970_9217682
Length = 713
Score = 559 bits (289), Expect = e-164
Identities = 306/313 (97%), Gaps = 3/313 (0%)
Strand = Plus / Minus
Query: 1 tacatcttcatttgaaggctgctagcagaatactggcttccaggcagctaggatgaaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tacatcttcatttgaaggctgctagcagaatactggcttccaggcagctaggatgaaggt 609
Query: 61 ctttaagtccatgcctgtagtgacacacctactccaacgaggccatgcctcctgatagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctttaagtccatgcctgtagtgacacacctactccaacgaggccatgcctcctgatagtg 549
Query: 121 ccactccctggaccaagaatatacaaaccaacacaggatatttcaggccacacagtctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ccactccctggaccaagaatatacaaaccaacacaggatatttcaggccacacagtctct 489
Query: 181 catgggtgagaaaatcaccaacttagagaggtcacgagaccactcgggatcgataaaatt 240
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 488 cataggtgagaaaatcaccaacttagagaggtcacgagaccacttgggatcgataaaatt 429
Query: 241 ctgcctgtatttatttttattttctgatattttaggagctcctgttattgtt---gtttt 297
||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 428 ctgcctgtagttatttttattttctgatattttaggaggtcctgttattgttattgtttt 369
Query: 298 tcattagcttgca 310
|||||||||||||
Sbjct: 368 tcattagcttgca 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 713
Length adjustment: 9
Effective length of query: 301
Effective length of database: 704
Effective search space: 211904
Effective search space used: 211904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
