Query= MSMg01no369_i19.b1 MSMg01no369_i19.b1 CHROMAT_FILE:
MSMg01no369_i19.b1 PHD_FILE: MSMg01no369_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:18 2005
(394 letters)
>mm_chr17_41894311_41895103
Length = 793
Score = 746 bits (386), Expect = 0.0
Identities = 389/390 (99%), Gaps = 1/390 (0%)
Strand = Plus / Minus
Query: 5 gaattctttccatgacactctgtcatactcttccacataattggacttaaagatttcctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaattctttccatgacactctgtcatactcttccacataattggacttaaagatttcctt 498
Query: 65 aaggagctgagacttttattttatgagtgagtctacaccttgtaagagcatgtcagtaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaggagctgagacttttattttatgagtgagtctacaccttgtaagagcatgtcagtaat 438
Query: 125 tcccattagtactttaatcatttttatgagatgctaataaaaaaaaaagaaaggaaacct 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 437 tcccattagtactttaatcatttttatgagatgctaat-aaaaaaaaagaaaggaaacct 379
Query: 185 aaattcaggtatatttgaatttctatgagcatggaaagatctatattctccagatgtgac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaattcaggtatatttgaatttctatgagcatggaaagatctatattctccagatgtgac 319
Query: 245 tgtatatcattttattacagcttataaatatttataatgataatatactatcaatcattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgtatatcattttattacagcttataaatatttataatgataatatactatcaatcattt 259
Query: 305 tcatttttcctttcattttcattaaagtttatttaagttatttatcactgtggggtgtgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcatttttcctttcattttcattaaagtttatttaagttatttatcactgtggggtgtgt 199
Query: 365 gtgtgtgtgtgtgtgtgtgtgtgtgtgtaa 394
||||||||||||||||||||||||||||||
Sbjct: 198 gtgtgtgtgtgtgtgtgtgtgtgtgtgtaa 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 9
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 793
Length adjustment: 9
Effective length of query: 385
Effective length of database: 784
Effective search space: 301840
Effective search space used: 301840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_i19.g1 MSMg01no369_i19.g1 CHROMAT_FILE:
MSMg01no369_i19.g1 PHD_FILE: MSMg01no369_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:18 2005
(471 letters)
>mm_chr17_41704387_41705257
Length = 871
Score = 756 bits (391), Expect = 0.0
Identities = 439/471 (93%), Gaps = 26/471 (5%)
Strand = Plus / Plus
Query: 1 atatgtacactaacctttctggcatgttataactgcacatacttctgagattcataataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgtacactaacctttctggcatgttataactgcacatacttctgagattcataataa 260
Query: 61 tattttgatacaactgtacagtatattttgatcatgttatttccctatgccctatctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttgatacaactgtacagtatattttgatcatgttatttccctatgccctatctttt 320
Query: 121 gtgtataaatcttttactactattcatctacatggatagtgctttatttcatagaatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtataaatcttttactactattcatctacatggatagtgctttatttcatagaatatg 380
Query: 181 gtgattctaatttgaatgttcatgacaactaacttattgatcacaaaactaaaacatagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgattctaatttgaatgttcatgacaactaacttattgatcacaaaactaaaacatagt 440
Query: 241 caaaataatttggaagacaatagtgtagattgtacctataatagtggttgatatatatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 caaaataatttggaagacaatagtgtagattgtacctataatagtggttgacatatatat 500
Query: 301 atatatatatatatatatatatatatatatatatttgaaacagattttctctgtatagcc 360
|||||| | ||||| ||| |||||||||||||||||
Sbjct: 501 atatat-t-------------------------tttgagacatattttctctgtatagcc 534
Query: 361 ctggctgtcctgaaactcagtttgtagaccaggctggcctcaaattcagaaatctaactg 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ctggctgtcctggaactcagtttgtagaccaggctggcctcaaattcagaaatctaactg 594
Query: 421 ccgctgcctcccaagtgctggcattaaaggcgtgtgccaagaggcccagct 471
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 595 ccgctgcctcccaagtgctggcattaaaggcgtgtgccaccaggcccagct 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
