BAC Information

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BAC

Clone NameMSMg01-369O03
Chromosome17 (Build37)
Map Location 40,456,754 - 40,456,876
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1
Downstream geneLOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369O03.T7 (MSMg01no369_o03.b1)MSMg01-369O03.TJ (MSMg01no369_o03.g1)
ACCAG476761AG476762
length862895
length of high quality
(start - end)
127 (65 - 191)41 (63 - 103)
definitionCHROMAT_FILE: MSMg01no369_o03.b1 PHD_FILE: MSMg01no369_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:44 2005CHROMAT_FILE: MSMg01no369_o03.g1 PHD_FILE: MSMg01no369_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACAT
TTTTCACAGAACGAGAAGTGTCCAAACCTAATTGTTGATATTAGGAAATT
GTTGAATGTTTTAGAAAACAACTGTGTCTTGTACCTTTGAAAATTCAATG
TGATAATACCTTCAAGAGAGACCCATTGGTCATGCAAACTCTATGTGCCC
CATTACAGGAGAATGCCTGTTTCTTAAATTGTTAGTGGTTGTCTAGGTAA
TTCTCCCCTCCTTTCCTTATTTCACTCCCACCCTTCTTTCTTTCTTTCTC
TTTATTCTTTTTTCTTTTTTCTTCCTTTCCTCACTTTCCCCTTATTTTCT
CCTATACCTCCCACTTTATTTTTCCTATTTATTTCTTTTTTTCTCTCGTA
TTTATCCTCCCTTTTCTCTTTTCTTCCCTTTTTTCTCTCTCCCACTTTCC
TCTTTTCTTCCTTATTTTCTTCCTCTTTCCTCTCCTTTCACTCTTTTTTT
TCACCAACTCCTTCTCCCCTTTTTTTTCTCATCCTCTTTATCCTCTTTCC
CTCCTTCTACCTTTTTTTTTTCCTATTCCTTTACATTTCTCCCTATATTA
TCTTCTTCTTTTTCTTTTCTTTTTCTATTTCCTTCACTCTTTTTTCTTTC
TCTCTCCTTTCTTTCCTTTATTACCTTTCTTCTTTCTTCTTCTCCCCGTG
TTTAATTTCACTCAATTCCTTTTTTCTTTCCATTCACCCTTTTTTCTTCC
CACCTTCCTTTCACTTATTCCTTTTTTTTTCCCCCCCTTCTTATCACATA
TTTCCCCGTTTTTTTCTCCCTCTTTTTTCTCTTTATTTTTCATCTTTATG
CCACATTTCTTC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TCTTGGAGATCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTT
TAAATTTTGGCCTATCTTTTCAGGTGTCTTAGGGTGTCCTGGACTGTTTT
AAGTGGGCGTTCTGGGCCCCGATGATGCCGAGTGGCCCTGGTTCCTCGTT
AGTAGGATTCCTATGTTTACCTTTCGCCCTCTGGCCCTCTCTGTTTTTTA
TTTGCCATAGTTGCCTCTGCTATTAGATTGCTCTCCCGCCGATCCCGTTC
CCCGCCATTTTTTTTTTTCGTATAACCCCTTTCTTTCTCTCCGATCTTCC
TTTTTTTTTACCCTTTTTTTTGTTTTTTGCTTCCCTCTCTTCTCTTCACA
ATTGCTCTTTATCTATTTTATCTTTGTTCCGTATCTCTTTTTTCTTTTTG
ATTCTTTTCACGTTTTTTTTTTTTCTTCCTTACTCCTCCACTCTCTTTTT
ATCTTTTTTTTGTTCTTCGTTTCTTGTTTTCCTCCTCCCTTTTGTCCTCT
CCGCATATTTTTTATCCCCTTACTCTTCTTCCATTTGTTTCTTTTACTCT
CTTTTTCTCCCGCTCTCCCTCCTTTCTTTCTCTTTTGTCCTCTTCCTTCC
TCTTATCTTCTCCTCTCCCTATTCCCTTCCTCTCATCTTCCCTCTTTTTT
ATTTCTTCCCCTCCTCCTCTCTTTCGCCCAATCCCCTCTTCACCCCTTCT
CCTTCTCCCCTCTTTTTTCTCCCTTTCTTTTTCCTCTCCTTCTTTATCTT
TCTCTCTTCCTTCTTTTTCATTCTCTCCCCCCTCTCTCTATTTCCCCTTA
TCTCCCCCCCTCTTCCTCTCTCCCTCCTCTACTTTTTCCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_o03.b1 MSMg01no369_o03.b1 CHROMAT_FILE:
MSMg01no369_o03.b1 PHD_FILE: MSMg01no369_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:44 2005
         (127 letters)



>mm_chr17_40456551_40457077
          Length = 527

 Score =  230 bits (119), Expect = 2e-65
 Identities = 122/123 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gtgtccaaacctaattgttgatattaggaaattgttgaatgttttagaaaacaactgtgt 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 gtgtccaaacctaattgttgatattaggaaattgttgaatgctttagaaaacaactgtgt 263

                                                                       
Query: 64  cttgtacctttgaaaattcaatgtgataataccttcaagagagacccattggtcatgcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttgtacctttgaaaattcaatgtgataataccttcaagagagacccattggtcatgcaa 323

              
Query: 124 act 126
           |||
Sbjct: 324 act 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space:    61761
Effective search space used:    61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)