BAC Information

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BAC

Clone NameMSMg01-370H01
Chromosome17 (Build37)
Map Location 56,259,797 - 56,260,190
singlet/doubletsinglet
Overlap geneLrg1
Upstream geneLOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik
Downstream geneSema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370H01.T7 (MSMg01no370_h01.b1)MSMg01-370H01.TJ (MSMg01no370_h01.g1)
ACCAG477188AG477189
length765835
length of high quality
(start - end)
397 (42 - 438)194 (72 - 265)
definitionCHROMAT_FILE: MSMg01no370_h01.b1 PHD_FILE: MSMg01no370_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:30 2005CHROMAT_FILE: MSMg01no370_h01.g1 PHD_FILE: MSMg01no370_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCAATCTGACGCAGCTGCCCGCCGCCGCCCTGCAAGGGTGTCCGGGTC
TGCGGGAGCTGCACCTCTCGAGCAATCGCCTGCAGGCGCTGTTTCCCGAG
TTGCTGGCGCCCGTGCCCCGGCTGCGCGTCCTGGATCTGACCCGCAATGC
TCTCCGCAGCCTGCCCCCCGGGTTGTTCAGCACCTCGGCCAACCTGAGCA
CCCTGGTCCTGAGGGAGAACCAGCTGCGGGAGGTGAGCGCGCAATGGCTT
CAGGGCCTGGACGCCCTGGGCCACTTGGACCTGGCGGAGAACCAGCTGAG
TTCGCTGCCCTCCGGGCTCCTCGCCAGCCTCGGCGCCCTGCACACCCTCG
ACCTTGGGTACAACCTGCTGGAGTCGCTGCCCGAGGGACTCCTGCGGTTC
CCAAGGCGGCTGCAGCGCCTGCACCTGTAAGGGAACCGACTGTCCATGTT
GGAGATATATCTGCTTGCCTCTCAACTTTTTCTGCTTGCCCCTGTTCTCG
AATGTACCTCCTATTTCTCTTCCCCGCATAATCCTCTCTCCTTCATTCCC
TACATCTCTTCGATTATACTCCCATTTAGCCCCACCTATCCTTTTTTTCC
ATTTATTCCCCTTTCTTTCTATCTTCTCCCACCCCTCTCTCTTATCCCAC
CCTTTTGATCCCACCACCATTTACCTCCTTATTACCCTTCTTCCTTTTTA
TCCTTATAACTTTCC
GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTAGAAGCTAGGATGATCGTCCCAGGT
GTGGATGAAAGGCCCTCTCAGGTTCTCATGAACATGGATACTGGGTTCAT
GGAAGGTAGGGAGCACCTGAAAATCTATCGCCAGGCTCTAATGGTGGGTC
TCGTCTCTGTGGGGGTGGGAAGTGCTCCACCAATCTGACCAAGGTAAAAG
GGAAATTACAGAAGTTAGAAGGATAGACAGAGTATGTCATAAGAGAGTTG
TACAGGTCGATTAGATAGTACTAGGAGGTGTGAACCAAGGAATATAGAGA
GTGTTTAGAGTTATTACCTTTTCATATTCCCTTATCTTTCTTCCTTTTAC
ATTATATCTTCCTCTCCCTCTTTTTTCTCTCTTTACACTTTTTCTCTACC
CTCTCCCTCTTTTCGATCCCTTTTATTTTTTTTTTCTTCCCTTTTCCCCC
CATTATTTCTCTTTTCTTTTTTTTCCTTCTTATCGCCCTTTTTTTATTAC
ACCCCTCCTCTCTTTTTTTTTTTTTTTCTCCTTCCCCCTTCTTCTCGCCT
TTCTTCTTTTTCTTTCTTTCTCCCTTATACTCTCCTGTACCATTATCTCT
TCTCTTTCTTTCTCCCTTTTCTTTTCCCCTCTTAGTATTATATTCCTTCT
CTCCCCCCTATAACCTCTCTTTTTCTTAACTATCCTTTTCTCCCGCCGTT
CTCTATTTTCTTCTTCACTCCCTACTCATATTTATTTACCCCTTCTCTCT
TCTTTCAGCTCTTTCTCCCTTTAATCCTCTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_h01.b1 MSMg01no370_h01.b1 CHROMAT_FILE:
MSMg01no370_h01.b1 PHD_FILE: MSMg01no370_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:30 2005
         (397 letters)



>mm_chr17_56259594_56260390
          Length = 797

 Score =  739 bits (382), Expect = 0.0
 Identities = 391/394 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccaatctgacgcagctgcccgccgccgccctgcaagggtgtccgggtctgcg 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ggaattctccaacctgacgcagctgcccgccgccgccctgcaagggtgtccgggtctgcg 538

                                                                       
Query: 64  ggagctgcacctctcgagcaatcgcctgcaggcgctgtttcccgagttgctggcgcccgt 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 537 ggagctgcacctctcgagcaatcgcctgcaggcgctgtctcccgagttgctggcgcccgt 478

                                                                       
Query: 124 gccccggctgcgcgtcctggatctgacccgcaatgctctccgcagcctgccccccgggtt 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gccccggctgcgcgccctggatctgacccgcaatgctctccgcagcctgccccccgggtt 418

                                                                       
Query: 184 gttcagcacctcggccaacctgagcaccctggtcctgagggagaaccagctgcgggaggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gttcagcacctcggccaacctgagcaccctggtcctgagggagaaccagctgcgggaggt 358

                                                                       
Query: 244 gagcgcgcaatggcttcagggcctggacgccctgggccacttggacctggcggagaacca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gagcgcgcaatggcttcagggcctggacgccctgggccacttggacctggcggagaacca 298

                                                                       
Query: 304 gctgagttcgctgccctccgggctcctcgccagcctcggcgccctgcacaccctcgacct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gctgagttcgctgccctccgggctcctcgccagcctcggcgccctgcacaccctcgacct 238

                                             
Query: 364 tgggtacaacctgctggagtcgctgcccgaggga 397
           ||||||||||||||||||||||||||||||||||
Sbjct: 237 tgggtacaacctgctggagtcgctgcccgaggga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)