BAC Information

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BAC

Clone NameMSMg01-370J13
Chromosome17 (Build37)
Map Location 88,451,699 - 88,452,099
singlet/doubletsinglet
Overlap geneFbxo11
Upstream geneEG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6
Downstream geneEG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370J13.T7 (MSMg01no370_j13.b1)MSMg01-370J13.TJ (MSMg01no370_j13.g1)
ACCAG477306AG477307
length785819
length of high quality
(start - end)
404 (37 - 440)240 (69 - 308)
definitionCHROMAT_FILE: MSMg01no370_j13.b1 PHD_FILE: MSMg01no370_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:42 2005CHROMAT_FILE: MSMg01no370_j13.g1 PHD_FILE: MSMg01no370_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTC
CTTCTCACTGGTGTAGCAAGTGCTTTTACCCACTAAGCTATCTTTCTAGC
CCTTAAGAAGTAATCTTATCACTACTTCAAAGTTTACCTATCAGTGCCTG
AAATCTCATCTACTCAGGGGGCTGAGACAGGAGGATTATAAATTCAAGGT
CAGCCTGGGAAATTTAGAGTTTCTGTCTAAAAATAAGAACTTTGAAAAGA
GAATTGGAGATGTATCTCATTAGTCTCCAGTTCAATTTTACTTTATATGA
AAACACACTTAATGACACACACCCCTCAACTGCGGGTTGACTGAGTTCAA
GGAGGACAGCTTTTGATATTTAGGAATTTTTAAATATTTCAGACTTGGAC
ATGTCAAATTTGAGTATTCAAGAACTAATAATACTGAAGTGGTCCTAAGT
ATTTTTCTTTCTACATTTACGCTTCTGAGCACCCCTCCCCCCTTTTATAC
ATCCTTTTATTACTCATCTTTTTGCATCTGCTTTCCTCTGACCTGTCTTC
TTTATCTCCATAACCCGCTCTTTTCTCTCTTCCTTATTGTTCTTTTCCCC
CTCTTTTCCTTCATTTTCTTTAATCCCCCTCATCTCCCATATTTCCCCCT
TTTTTACCCCCACCCCTTTTTCTCCTTATTCCCCTTTTCTACTATTTTCT
TCTTTTCATTTTTCTTTTTTCCGCCCTTCGCACCTCCCCTTTTCCTACTA
TTTTACCTTATTCCCTTTTTCCATCTCCCCTTCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTGCTTCAGGTTTTAATAG
GGCTATTTGGTTCTCTGGAGTCTCACTTCTGGAGTTCTTTTTATATATAT
TGGATATTAGCCCTCTATTGGATTTAGGATTGGTAAAGATCTTTTCCCAA
TCTGTTGGTTGCCTTTTTTTTTCCTTTTTGTCTTATTGACAGTGTCCTTT
GCCTTACAGAAGCTTTGCAATTTTATAAGGTCCCATTTGTTATTTCTTGA
TCTTACAGTACCGGCCCTTGTTTGCTCTGTTCAGGACTTTTCCCACTGTG
CCCTTATGCTCTAGCATCTCTTTCCCTCCTTCCCCCTCTATATATCCCAG
CGTTCCCCCCCCCCCCCCGGGATTTCCTCCGATCCCCCTTTTCCCCTTCC
TTTCCTCTTCTTTCCGTCTCCCCCCCTTCTTTCTTCTCCCTTCTCATTTT
TTCTCCTTCCTTTTCTCCCCTCTCTTCTCCTTCCTTTTCTTCCCTTTTTT
TCCTCCTTTCTTTTTTTACCCGCCCCGCCCCTTCTCCTTTTCCTTCTTTC
TCTTCTTACCCCTTTTCTTCTTTCATCTTTTCGCCTTTTCTCCCCCCGTC
CTCTTTCTTTTTTCCTTTTTCCGCCCTTCTTTCTCATCTTCTTCTCTTTT
TCCCCCCCCCCATCTTCCCTCCTTCTTTTCTCTTTCTTTCTTCCCCCTTC
TTTCTTCTTTTTCCCCCGTCTTTTTTTTTTCTCTTCCCACTCCTTCCCCT
CTGTCACTTTTCCTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_j13.b1 MSMg01no370_j13.b1 CHROMAT_FILE:
MSMg01no370_j13.b1 PHD_FILE: MSMg01no370_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:42 2005
         (404 letters)



>mm_chr17_88451296_88452099
          Length = 804

 Score =  706 bits (365), Expect = 0.0
 Identities = 392/401 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtccttctcactggtgtagcaagtgcttttacccactaagctatctttctag 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggaattcagtccttcacactggtgtagcaagtgcttttacccactaagctatctttctag 745

                                                                       
Query: 64  cccttaagaagtaatcttatcactacttcaaagtttacctatcagtgcctgaaatctcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cccttaagaagtaatcttatcactacttcaaagtttacctatcagtgcctgaaatctcat 685

                                                                       
Query: 124 ctactcagggggctgagacaggaggattataaattcaaggtcagcctgggaaatttagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctactcagggggctgagacaggaggattataaattcaaggtcagcctgggaaatttagag 625

                                                                       
Query: 184 tttctgtctaaaaataagaactttgaaaagagaattggagatgtatctcattagtctcca 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 624 tttctgtctaaaaataagaactttgaaaagagaattggagatgtatctcattagtctcga 565

                                                                       
Query: 244 gttcaattttactttatatgaaaacacacttaatgacacacacccctcaactgcgggttg 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 564 gttcaattttactttatatgaaaacacacttcatgacacacacccctcaactgcgggtta 505

                                                                       
Query: 304 actgagttcaaggaggacagcttttgatatttaggaatttttaaatatttcagacttgga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actgagttcaaggaggacagcttttgatatttaggaatttttaaatatttcagacttgga 445

                                                    
Query: 364 catgtcaaatttgagtattcaagaactaataatactgaagt 404
           ||||| |  |||||||||||||||||||||  |||||||||
Sbjct: 444 catgtgatttttgagtattcaagaactaatgctactgaagt 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)