Query= MSMg01no370_k18.b1 MSMg01no370_k18.b1 CHROMAT_FILE:
MSMg01no370_k18.b1 PHD_FILE: MSMg01no370_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:48 2005
(464 letters)
>mm_chr17_85524872_85525739
Length = 868
Score = 864 bits (447), Expect = 0.0
Identities = 458/464 (98%), Gaps = 4/464 (0%)
Strand = Plus / Plus
Query: 5 gaattcatatgctgtggggtttccgtttcttttagagagtgcatataatttagtggccca 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatgctgtgggatttccgtttcttttagagagtgcatataatttagtggccca 264
Query: 65 aatctaagctcacacatatgatactccttatttggagagactgtgttctttcttttactc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatctaagctcacacatatgatactccttatttggagagactgtgttctttcttttactc 324
Query: 125 ttcctctgaccagtttgagtttacaaccttattatttcctata----tttttgaaagcct 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ttcctctgaccagtttgagtttacaaccttattatttcctatatatttttttgaaagcct 384
Query: 181 ttaagacacatccattttgtgtatttttcagatttttttaatcaacctaagagtagtaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaagacacatccattttgtgtatttttcagatttttttaatcaacctaagagtagtaaa 444
Query: 241 ctttcattagtcattttatttactgaagtcaatgaaataaaatacttgtaaataagtttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttcattagtcattttatttactgaagtcaatgaaataaaatacttgtaaataagtttt 504
Query: 301 agtaatctctttttcaaccaggaatgttaatatccagtcctttgtaaagtattctctaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtaatctctttttcaaccaggaatgttaatatccagtcctttgtaaagtattctctaca 564
Query: 361 tgttatctgaaattattgagatctatcaacaaatatttatattatcctacttaactaana 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 tgttatctgaaattattgagatctatcaacaaatatttatattatcctacttaactaata 624
Query: 421 taagctaatatttttacaaatattttaggacattcaagtatttt 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taagctaatatttttacaaatattttaggacattcaagtatttt 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 868
Length adjustment: 10
Effective length of query: 454
Effective length of database: 858
Effective search space: 389532
Effective search space used: 389532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_k18.g1 MSMg01no370_k18.g1 CHROMAT_FILE:
MSMg01no370_k18.g1 PHD_FILE: MSMg01no370_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:48 2005
(378 letters)
>mm_chr17_85701526_85702306
Length = 781
Score = 656 bits (339), Expect = 0.0
Identities = 359/367 (97%), Gaps = 3/367 (0%)
Strand = Plus / Minus
Query: 15 acacacacacacacacacacacacacacacacacacacacacaggaacttcaacacagat 74
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 763 acacacacacacacacacacacacacacacacacacacacactggaacttcaacacagat 704
Query: 75 tcaatgagaactcagtggagaaagaatggcattctcaacaaaggatgctagaataattcg 134
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 703 tcaatgagaactcagtggagaaagaatgatattctcaacaaaggatgctagaataattag 644
Query: 135 aaatcaatatgtaaaataagaatctcaatctataccttgtatcatttacaaagactttaa 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaatcaatatgtaaaataagaatctcaatctataccttgtatcatttacaaagactttaa 584
Query: 195 aacttcgagtataagagccttgtatgaaaatgagagagaaaacattcatggccttgagta 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aacttcgagtataagagccttgtatgaaaatgagagagaaaacattcatggccttgagta 524
Query: 255 agataatgagaaatgcctagcacatgaaatcaaaagtgtaatttgtaaaaagaaa---aa 311
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 523 agacaatgagaaatgcctagcacatgaaatcaaaagtgtaatttgtaaaaagaaagaaaa 464
Query: 312 aaaaaaagacttgaacttcattaaagtaagaggacctaccatgccaccaaacagcaaatg 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaaaaaagacttgaacttcattaaagtaagaggacctaccatgccaccaaacagcaaatg 404
Query: 372 aaatcca 378
|||||||
Sbjct: 403 aaatcca 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 23
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 781
Length adjustment: 9
Effective length of query: 369
Effective length of database: 772
Effective search space: 284868
Effective search space used: 284868
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
