Query= MSMg01no370_n19.b1 MSMg01no370_n19.b1 CHROMAT_FILE:
MSMg01no370_n19.b1 PHD_FILE: MSMg01no370_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:02 2005
(526 letters)
>mm_chr17_14034991_14035917
Length = 927
Score = 1004 bits (519), Expect = 0.0
Identities = 522/523 (99%), Gaps = 1/523 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatcctggctgcccttgaacgtttgcttaagtcaaggcagattgtcatgttttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcctggctgcccttgaacgtttgcttaagtcaaggcagattgtcatgttttc 264
Query: 65 tctttcgtcccttttcatatttacctccttcttgtggtctaaatctcttgtcaatcctta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctttcgtcccttttcatatttacctccttcttgtggtctaaatctcttgtcaatcctta 324
Query: 125 acaaaactgtgttgttgcctttttttaaatgtaaaaagaatttcaatactgtcaactgta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaaaactgtgttgttgcctttttttaaatgtaaaaagaatttcaatactgtcaactgta 384
Query: 185 gtttgcctgaatgaaaatgtacagtgtgtgtcagaatatatctgctaacactattaatgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttgcctgaatgaaaatgtacagtgtgtgtcagaatatatctgctaacactattaatgc 444
Query: 245 ttggctcccattttctgttcctcagagagtttattaagatttgaaacatatattaactct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggctcccattttctgttcctcagagagtttattaagatttgaaacatatattaactct 504
Query: 305 ggaagcatacgtgttagattgtggctttgggaaaatgagtgatatttcttattgtttatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaagcatacgtgttagattgtggctttgggaaaatgagtgatatttcttattgtttatg 564
Query: 365 gtttcctcttgaaacacagcagaaaaaggtaagttaatatcctgttcaaacagaagagga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtttcctcttgaaacacagcagaaaaaggtaagttaatatcctgttcaaacagaagagga 624
Query: 425 gagaaaa-tgttctaggaaaagaggaggactaaagaatgcagatgatcctaaatctaact 483
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagaaaaatgttctaggaaaagaggaggactaaagaatgcagatgatcctaaatctaact 684
Query: 484 gtgcaaatgaaaagtcctaagatttgactcatcccatgcttct 526
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgcaaatgaaaagtcctaagatttgactcatcccatgcttct 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 927
Length adjustment: 10
Effective length of query: 516
Effective length of database: 917
Effective search space: 473172
Effective search space used: 473172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_n19.g1 MSMg01no370_n19.g1 CHROMAT_FILE:
MSMg01no370_n19.g1 PHD_FILE: MSMg01no370_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:02 2005
(404 letters)
>mm_chr17_14274678_14275481
Length = 804
Score = 735 bits (380), Expect = 0.0
Identities = 398/404 (98%)
Strand = Plus / Minus
Query: 1 ttcttagatgacccaagcttgtgtcaagctggcattaaaaactagacagcctggatggtg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttcttagacgacccaagcttgtgtcaagctggcattaaaaactagacagcctggatggtg 595
Query: 61 acagtgtggacagtgacatggaattgtcacccttcctcccatgtcacttccgatccagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 acagtgtggacagtgacatggaattgtcacccttcctcccatgtcacttccgatccagat 535
Query: 121 gttttaccaaggcaacataaatgaagttagggtgtagggcagaaactggggctgaagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gttttaccaaggcaacataaatgaagttagggtgtagggcagaaactggggctgaagcag 475
Query: 181 aacatcacatactccgcaagctaccgggttcattgctccacataagtcccaaagaaacag 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aacatcacatactccacaagctaccgggttcattgctccacataagtcccaaagaaacag 415
Query: 241 tgtctatgctcagcagaaagctctccatgcatgcagcaccacagctagcaacagtcccca 300
|| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 414 tgcctacgctcagcagaaagctctccatgtatgcagcaccacagctagcaacagtcccca 355
Query: 301 actataaacaacccaattcccatctgtgtgctgataaactatgatgtatctgtatcactg 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 354 actataaacaacccaattcccatctgtgtgctgataaactacgatgtatctgtatcactg 295
Query: 361 acccagatcaactgcagtgggaaacagtgcacagtcagagccac 404
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acccagatcaactgcagtgggaaacagtgcacagtcagagccac 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
