BAC Information

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BAC

Clone NameMSMg01-371C13
Chromosome17 (Build37)
Map Location 85,083,472 - 85,083,998
singlet/doubletsinglet
Overlap geneAbcg8
Upstream geneMta3, Haao, Zfp36l2, Thada, Plekhh2, Dync2li1, Abcg5
Downstream geneLrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371C13.T7 (MSMg01no371_c13.b1)MSMg01-371C13.TJ (MSMg01no371_c13.g1)
ACCAG477735AG477736
length769820
length of high quality
(start - end)		527 (74 - 600)39 (67 - 105)
definitionCHROMAT_FILE: MSMg01no371_c13.b1 PHD_FILE: MSMg01no371_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:28 2005CHROMAT_FILE: MSMg01no371_c13.g1 PHD_FILE: MSMg01no371_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGACAGCTCATTGCCTTTTTAGCTGTA
ATCTGAAGGGCAAAAGCCCCCACACCCACCACTGATTTTATATCCTACTC
AGGAAGGGAGCATCAAAGACATAGAAGGAGTTATTTCCCCATAGACGTCT
GCCTCATGGGGATTCTGACAGCAGAGTTGCCTGTTGCTGTGGTAGTAGGA
TTGGTCAATCTCAGGCAATCCTGTCTCCCCTAGAACAGGGGACTGAGGCG
TCCCTGTTGAATGTGGCCATCCTGTTCTGGTCTTTGTCTCCAGAAAAGTG
GGCCGAGTGTAGAAGCTGGGGGGAGGGGGAGGTCGTCTCTGCTCTGTCTT
CCCATACTGCCTTCTGCTTCAAATCCTGCCCACAACTCGAGTCAAAGGCC
ATTTATCAAGCAAATGTTTCTCCGGTTAATGAGGAAGGAGGCCTAGGAGC
TCCACTTCCTGGCCACCTCGCTGCTCTCTGTCCACTCTGCCTTCCTCCCA
GACCATAAGACTGCAAGCACACAATTCTGACGCTCCCAAACAAGCGATCA
CTATCACAGCCAGTGGATTTGGTAACTGGCTGAAACCAATGTGGACCCTT
AGAATATTTTCTTGTTATAGGAGAAATAAATAATCCGGGCCTGGGGTAAT
GGTTCACTTGTATAACCCATGGTTTCTCCCCCCGTTACACCATATGGGGC
GGGAAAAATTATTCTTCCT

ATTTTGTTCCGCTAAACGATCACTATAGGTTCAGAATCCGCGGAATTCTA
AGCATGTTTTCCGAAGGCTGAAAAGACAGAAGTCATGTTCACACCCGTCC
TGGTGAGACTGGGTCGACTTGGGCTATATGAGGCTTTAAGAAGAACTGGA
GGGTTCTGTTTTGGTTTGGTTTTGGTTTTGCCTGCACCGGCAGCACACAC
TAATGATCCCAACACTTGCCGCTGCGGAGAGAGAAAGAAAGATTGTTTGA
ATTTTAAAATAGATTCTTTCTCCCCCTAGCAGATGTGTCTAGCCTTTGGC
CACAACAACTATAACTTTTCCAGTTTTTTGTCNCATGTTTCAAGGCCCGA
TNNNCTTGATTCACAATTAGCTGGAAAACCTTCCTTACCATAATTTTACA
GTTTATCGGGGGTGGGGGTTATTGCCCCCCATTCCTAACATTATCCCCTG
GGTTGAACCACATTTCTCCCCTCCTCCTCTTTATATACTGTGGACTCTTT
CTCTCTTCCCACTACACATCTTCTCTCCCCCGCTTTTTCTATCTTTTGCT
GACTTCCCCTTCCTACATAGTACTCCTTCTCCTATCATCCAATCTTTTCC
ATTGCCTTTTTATCTCTTCCCTTTTACCCCTTTCTTCCTCGTCTTTTCTC
TCCTTCTTCCTGATTAACAAAACATTCTTTATCTCTTTCTCCTCTTACTT
CTTCCACCCCCCTCTCCTTTCTTTTCTTTTCCTTGTCCTTCTTGCCATTT
CAACCCTACTATTCCTATTTCTCTCTTCTTCTTTTCTACCCCCTTTTCCC
TTCTCTTCCCCTGATCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_c13.b1 MSMg01no371_c13.b1 CHROMAT_FILE:
MSMg01no371_c13.b1 PHD_FILE: MSMg01no371_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:28 2005
         (527 letters)



>mm_chr17_85083272_85084198
          Length = 927

 Score =  988 bits (511), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacagctcattgcctttttagctgtaatctgaagggcaaaagcccccacacccaccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tgacagctcattgcctttttagctgtaatctgaagggcaaaagcccccacacccaccact 668

                                                                       
Query: 61  gattttatatcctactcaggaagggagcatcaaagacatagaaggagttatttccccata 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 667 gattttatatcctactcaggaagggagcatcaaagacgtagaaggagttatttccccata 608

                                                                       
Query: 121 gacgtctgcctcatggggattctgacagcagagttgcctgttgctgtggtagtaggattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gacgtctgcctcatggggattctgacagcagagttgcctgttgctgtggtagtaggattg 548

                                                                       
Query: 181 gtcaatctcaggcaatcctgtctcccctagaacaggggactgaggcgtccctgttgaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtcaatctcaggcaatcctgtctcccctagaacaggggactgaggcgtccctgttgaatg 488

                                                                       
Query: 241 tggccatcctgttctggtctttgtctccagaaaagtgggccgagtgtagaagctgggggg 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 487 tggccatcctgttctggtctttgtctccagaaaagtgggccgggtgtagaagctgggggg 428

                                                                       
Query: 301 agggggaggtcgtctctgctctgtcttcccatactgccttctgcttcaaatcctgcccac 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agggggaggtcgtctttgctctgtcttcccatactgccttctgcttcaaatcctgcccac 368

                                                                       
Query: 361 aactcgagtcaaaggccatttatcaagcaaatgtttctccggttaatgaggaaggaggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aactcgagtcaaaggccatttatcaagcaaatgtttctccggttaatgaggaaggaggcc 308

                                                                       
Query: 421 taggagctccacttcctggccacctcgctgctctctgtccactctgccttcctcccagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 307 taggagctccacttcctggccacctcgctgctctctgtccactctgcctccctcccagac 248

                                                          
Query: 481 cataagactgcaagcacacaattctgacgctcccaaacaagcgatca 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cataagactgcaagcacacaattctgacgctcccaaacaagcgatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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