Query= MSMg01no371_m11.b1 MSMg01no371_m11.b1 CHROMAT_FILE:
MSMg01no371_m11.b1 PHD_FILE: MSMg01no371_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:21 2005
(522 letters)
>mm_chr17_45423728_45424649
Length = 922
Score = 955 bits (494), Expect = 0.0
Identities = 515/522 (98%)
Strand = Plus / Minus
Query: 1 aattcccaggacccacatggtggaaggagagaaccaattcccaaaaattgtcctctgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aattcccaggacccacatggtggaaggagagaaccaattcccaaaaattgtcctctgact 748
Query: 61 ttcacgaatgtgatgtggtatgtgcttgctcccagcttcagcccacagtaaataataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttcacgaatgtgatgtggtatgtgcttgctcccagcttcagcccacagtaaataataaaa 688
Query: 121 gttaagagtaaaagaacatttagttcttggaatagtaaaacggcactttaaaaaccattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gttaagagtaaaagaacatttagttcttggaatagtaaaacggcactttaaaaaccattg 628
Query: 181 cctgggttagctattgcactttttccttctctgcaagaatgtcaggatggcatgtcccag 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 627 cctgggttagctattgcactttttccttctctgcaagaatgtcaggatggtatgtcccag 568
Query: 241 ataggatatctccattagcttgtgaatgggcatgtggaacaaaacccatctgttggtaca 300
|||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 567 ataggatacctccatcagcttgtgaatgggcatgtggaacaaaacccatttgttggtaca 508
Query: 301 gaaggtatgagaggaaaggaaaccgtgacacttttagtcgctgagatttaggttgttatc 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 507 gaaggtatgagagaaaaggaaaccgtgacacttttagtcgctgagatttaggttgctatc 448
Query: 361 atacatgcaaggtgacagaacacaacactgagcccacagtgcctcctgtgagtgtgagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atacatgcaaggtgacagaacacaacactgagcccacagtgcctcctgtgagtgtgagca 388
Query: 421 cactggatgagcctgtccttgtggggacactgtccttgttgtctgagtgtctgctgaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cactggatgagcctgtccttgtggggacactgtccttgttgtctgagtgtctgctgaggt 328
Query: 481 tccagggcagacagaggggaggcaaaagtttgaattgataag 522
||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 327 tccagggcagacagaggggaggcaaaagtttgagttgataag 286
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_m11.g1 MSMg01no371_m11.g1 CHROMAT_FILE:
MSMg01no371_m11.g1 PHD_FILE: MSMg01no371_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:21 2005
(520 letters)
>mm_chr17_45221532_45222451
Length = 920
Score = 936 bits (484), Expect = 0.0
Identities = 509/518 (98%), Gaps = 4/518 (0%)
Strand = Plus / Plus
Query: 5 gaattcattctgtttc-c-tcttgcttgtgggtcttagcctttaacagctgaaccatctt 62
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctgt--cacatcttgcttgtgggtcttagcctttaacagctgaaccatctt 262
Query: 63 tctagcccatttctcaaagatttaattcaaatagtaagaaaataaaaatctacttagaag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctagcccatttctcaaagatttaattcaaatagtaagaaaataaaaatctacttagaag 322
Query: 123 gcattatgggcaatattttccctaatttcttcaaggagaccttgttctgtaaaatgatgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcattatgggcaatattttccctaatttcttcaaggagaccttgttctgtaaaatgatgg 382
Query: 183 ctctttgtaaagatgtcacatttttttcttctcagagaacgagtagcttggtcagtcaat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctctttgtaaagatgtcacatttttttcttctcagagaacgagtagcttggtcagtcaat 442
Query: 243 ttgaggttaaatttattttcccataattgtgtgactgtctacactgccatatgtgcagtg 302
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 443 ttgaggttaaatttattttcccataattgtgtgactgtctgcactgccatatgtgcagtg 502
Query: 303 gatcagcagcccaagtctggttggttctgtcagtcaggagagtccttctaagacagctat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gatcagcagcccaagtctggttggttctgtcagtcaggagagtccttctaagacagctat 562
Query: 363 tcccacccttcctgatgctgcaaccctttaagacagttcctcatggagtggtgacccaca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcccacccttcctgatgctgcaaccctttaagacagttcctcatggagtggtgacccaca 622
Query: 423 accagaaaataatttcattactacttcataactgtaattttgctaccgttgtgatcgtaa 482
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 accataaaagaatttcattactacttcataactgtaattttgctaccgttgtgatcgtaa 682
Query: 483 tgtgaatatctgatatgcaggatctctgctatgcggcc 520
||||||||||||||| |||||||||||| |||||||||
Sbjct: 683 tgtgaatatctgatacgcaggatctctgatatgcggcc 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
