MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-371N18
Chromosome	17 (Build37)
Map Location	87,237,303 - 87,237,554
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Srbd1, LOC545228, Prkce, Epas1
Downstream gene	1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12
Link	Open Mouse BAC browser

Click to get alignment info.

name	Srbd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78586 MGI:1925836
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 50 ESTs, 1 Protein

name	LOC545228 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545228
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	Prkce (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18754 MGI:97599
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Epas1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13819 MGI:109169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700090G07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78469 MGI:1925719
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 17 ESTs, 1 Protein

name	Atp6v1e2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74915 MGI:1922165
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhoq (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104215 MGI:1931553
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pigf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18701 MGI:99462
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cript (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56724 MGI:1929655
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433144 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433144 MGI:3643804
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 175 ESTs, 6 Proteins

name	Socs5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56468 MGI:2385459
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mcfd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:193813 MGI:2183439
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ttc7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225049 MGI:1920999
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700011E24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75467 MGI:1922717
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 1 Protein

name	Calm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12314 MGI:103250
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043727 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043727
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tacstd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17075 MGI:106653
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Msh2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17685 MGI:101816
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnk12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:210741 MGI:2684043
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Srbd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268828 GeneID:78586 MGI:1925836
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 50 ESTs, 1 Protein product : S1 RNA binding domain 1 transcript_id : XM_001480810.1

name	LOC545228 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268830 GeneID:545228
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : hypothetical protein LOC545228 transcript_id : XM_001480818.1

name	Prkce (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755083 GeneID:18754 MGI:97599
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C, epsilon transcript_id : NM_011104.1

name	Epas1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982801 GeneID:13819 MGI:109169
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : endothelial PAS domain protein 1 transcript_id : NM_010137.2

name	1700090G07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268832 GeneID:78469 MGI:1925719
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 17 ESTs, 1 Protein product : RIKEN cDNA 1700090G07 gene transcript_id : XM_355035.5

name	Atp6v1e2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42475953 GeneID:74915 MGI:1922165
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, H+ transporting, lysosomal V1 subunit E2 transcript_id : NM_029121.2

name	Rhoq (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328360 GeneID:104215 MGI:1931553
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ras homolog gene family, member Q transcript_id : NM_145491.2

name	Pigf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679314 GeneID:18701 MGI:99462
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol glycan anchor biosynthesis, class F transcript_id : NM_008838.1

name	Cript (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370678 GeneID:56724 MGI:1929655
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine-rich PDZ-binding protein transcript_id : NM_019936.2

name	EG433144 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268938 GeneID:433144 MGI:3643804
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 175 ESTs, 6 Proteins product : predicted gene, EG433144 transcript_id : XM_484670.5

name	Socs5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328248 GeneID:56468 MGI:2385459
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of cytokine signaling 5 transcript_id : NM_019654.2

name	Mcfd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378259 GeneID:193813 MGI:2183439
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : multiple coagulation factor deficiency 2 transcript_id : NM_176808.3

name	Mcfd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129996 GeneID:193813 MGI:2183439
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : multiple coagulation factor deficiency 2 transcript_id : NM_139295.2

name	Ttc7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380644 GeneID:225049 MGI:1920999
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetratricopeptide repeat domain 7 transcript_id : NM_028639.2

name	1700011E24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94402175 GeneID:75467 MGI:1922717
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 1 Protein product : RIKEN cDNA 1700011E24 gene, transcript variant 2 transcript_id : XM_128789.5

name	1700011E24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268939 GeneID:75467 MGI:1922717
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein product : RIKEN cDNA 1700011E24 gene, transcript variant 1 transcript_id : XM_001481211.1

name	Calm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46518512 GeneID:12314 MGI:103250
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calmodulin 2 transcript_id : NM_007589.4

name	LOC100043727 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268834 GeneID:100043727
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043727 transcript_id : XM_001480831.1

name	Tacstd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112293274 GeneID:17075 MGI:106653
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor-associated calcium signal transducer 1 transcript_id : NM_008532.2

name	Msh2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130707 GeneID:17685 MGI:101816
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mutS homolog 2 (E. coli) transcript_id : NM_008628.2

name	Kcnk12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40445392 GeneID:210741 MGI:2684043
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium channel, subfamily K, member 12 transcript_id : NM_199251.1

name	Srbd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268829 GeneID:78586 MGI:1925836
definition	codon_start : 1 product : S1 RNA binding domain 1 protein_id : XP_001480860.1

name	LOC545228 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268831 GeneID:545228
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480868.1

name	Prkce (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755084 CCDS:CCDS29008.1 GeneID:18754 MGI:97599
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004699 - calcium-independent protein kinase C activity [Evidence IDA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007635 - chemosensory behavior [Evidence TAS]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0050730 - regulation of peptidyl-tyrosine phosphorylation [Evidence IMP] codon_start : 1 product : protein kinase C, epsilon protein_id : NP_035234.1

name	Epas1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982802 GeneID:13819 MGI:109169
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0035035 - histone acetyltransferase binding [Evidence ISS]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0000155 - two-component sensor activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001666 - response to hypoxia [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0000160 - two-component signal transduction system (phosphorelay) [Evidence IEA] codon_start : 1 exception : mismatches in translation note : HIF1alpha-like factor; Hif like protein; HLF (HIF1alpha-like factor); hypoxia inducible transcription factor 2alpha; HIF1 alpha-like factor product : endothelial PAS domain protein 1 protein_id : NP_034267.2

name	1700090G07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268833 GeneID:78469 MGI:1925719
definition	codon_start : 1 product : hypothetical protein LOC78469 protein_id : XP_355035.4

name	Atp6v1e2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42475954 CCDS:CCDS29009.1 GeneID:74915 MGI:1922165
definition	GO_component : GO:0001669 - acrosome [Evidence IDA]; GO:0016469 - proton-transporting two-sector ATPase complex [Evidence IEA] GO_function : GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IMP]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA] GO_process : GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IMP] codon_start : 1 exception : mismatches in translation note : lysosomal 31kDa; ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E-like 2; ATPase, H+ transporting, V1 subunit E-like 2 product : ATPase, H+ transporting, V1 subunit E-like 2 isoform 2 protein_id : NP_083397.2

name	Rhoq (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328361 CCDS:CCDS29010.1 GeneID:104215 MGI:1931553
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003924 - GTPase activity [Evidence TAS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence TAS]; GO:0008360 - regulation of cell shape [Evidence IDA] codon_start : 1 note : small GTPase Tc10; ras-like protein product : ras homolog gene family, member Q protein_id : NP_663466.2

name	Pigf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679315 CCDS:CCDS29011.1 GeneID:18701 MGI:99462
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence TAS]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006506 - GPI anchor biosynthesis [Evidence IDA] codon_start : 1 product : phosphatidylinositol glycan, class F protein_id : NP_032864.1

name	Cript (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910166 CCDS:CCDS29012.1 GeneID:56724 MGI:1929655
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : postsynaptic protein Cript protein_id : NP_064320.1

name	EG433144 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82995207 GeneID:433144 MGI:3643804
definition	codon_start : 1 product : hypothetical protein protein_id : XP_484670.3

name	Socs5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328249 CCDS:CCDS29014.1 GeneID:56468 MGI:2385459
definition	GO_component : GO:0005737 - cytoplasm [Evidence NAS] GO_function : GO:0005154 - epidermal growth factor receptor binding [Evidence IPI]; GO:0019210 - kinase inhibitor activity [Evidence NAS]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence IDA]; GO:0007173 - epidermal growth factor receptor signaling pathway [Evidence IDA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007259 - JAK-STAT cascade [Evidence TAS]; GO:0009968 - negative regulation of signal transduction [Evidence NAS] [Evidence IEA]; GO:0045629 - negative regulation of T-helper 2 cell differentiation [Evidence IDA]; GO:0045627 - positive regulation of T-helper 1 cell differentiation [Evidence IDA]; GO:0001558 - regulation of cell growth [Evidence IEA] codon_start : 1 note : SOCS-5; cytokine inducible SH2-containing protein 5 product : suppressor of cytokine signaling 5 protein_id : NP_062628.2

name	Mcfd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21314834 CCDS:CCDS29015.1 GeneID:193813 MGI:2183439
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005576 - extracellular region [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0019752 - carboxylic acid metabolism [Evidence ISS]; GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : neural stem cell derived neuronal survival protein product : multiple coagulation factor deficiency 2 protein_id : NP_647456.1

name	Mcfd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28827786 CCDS:CCDS29015.1 GeneID:193813 MGI:2183439
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005576 - extracellular region [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0019752 - carboxylic acid metabolism [Evidence ISS]; GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : neural stem cell derived neuronal survival protein product : multiple coagulation factor deficiency 2 protein_id : NP_789778.1

name	Ttc7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30842800 CCDS:CCDS29016.1 GeneID:225049 MGI:1920999
definition	GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0030097 - hemopoiesis [Evidence IMP]; GO:0006879 - iron ion homeostasis [Evidence IMP] codon_start : 1 product : tetratricopeptide repeat domain 7 protein_id : NP_082915.1

name	1700011E24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268940 GeneID:75467 MGI:1922717
definition	codon_start : 1 product : hypothetical protein LOC75467 isoform 1 protein_id : XP_001481261.1

name	1700011E24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94402176 GeneID:75467 MGI:1922717
definition	codon_start : 1 product : hypothetical protein LOC75467 isoform 2 protein_id : XP_128789.3

name	Calm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680832 GeneID:12314 MGI:103250
definition	GO_function : GO:0005509 - calcium ion binding [Evidence TAS] GO_process : GO:0007049 - cell cycle [Evidence IDA] codon_start : 1 product : calmodulin 2 protein_id : NP_031615.1

name	LOC100043727 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268835 GeneID:100043727
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480881.1

name	Tacstd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112293275 CCDS:CCDS29018.1 GeneID:17075 MGI:106653
definition	GO_component : GO:0005886 - plasma membrane [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA] codon_start : 1 note : panepithelial glycoprotein 314; Trop-1 protein; lymphocyte antigen 74 product : tumor-associated calcium signal transducer 1 protein_id : NP_032558.2

name	Msh2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678938 CCDS:CCDS29019.1 GeneID:17685 MGI:101816
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] [Evidence ISS] [Evidence IC] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IMP]; GO:0019237 - centromeric DNA binding [Evidence IDA]; GO:0003684 - damaged DNA binding [Evidence IMP]; GO:0003677 - DNA binding [Evidence IMP]; GO:0004422 - hypoxanthine phosphoribosyltransferase activity [Evidence IDA]; GO:0030983 - mismatched DNA binding [Evidence IMP]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IMP] [Evidence IGI]; GO:0030183 - B cell differentiation [Evidence IMP]; GO:0019724 - B cell mediated immunity [Evidence IMP]; GO:0007049 - cell cycle [Evidence IEA]; GO:0007050 - cell cycle arrest [Evidence IMP]; GO:0006928 - cell motility [Evidence IMP]; GO:0008340 - determination of adult life span [Evidence IMP]; GO:0006259 - DNA metabolism [Evidence IEA]; GO:0006281 - DNA repair [Evidence IMP]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IGI]; GO:0031573 - intra-S DNA damage checkpoint [Evidence IGI]; GO:0045190 - isotype switching [Evidence IMP]; GO:0006298 - mismatch repair [Evidence IDA] [Evidence IMP]; GO:0045910 - negative regulation of DNA recombination [Evidence IMP]; GO:0043524 - negative regulation of neuron apoptosis [Evidence IMP]; GO:0006119 - oxidative phosphorylation [Evidence IMP]; GO:0006301 - postreplication repair [Evidence ISS] [Evidence IMP]; GO:0006164 - purine nucleotide biosynthesis [Evidence IDA]; GO:0006974 - response to DNA damage stimulus [Evidence IMP]; GO:0010224 - response to UV-B [Evidence IMP]; GO:0010165 - response to X-ray [Evidence IMP]; GO:0016446 - somatic hypermutation of immunoglobulin genes [Evidence IMP] [Evidence IGI]; GO:0016447 - somatic recombination of immunoglobulin gene segments [Evidence IMP] [Evidence IGI] codon_start : 1 product : mutS homolog 2 protein_id : NP_032654.1

name	Kcnk12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40445393 CCDS:CCDS29020.1 GeneID:210741 MGI:2684043
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005267 - potassium channel activity [Evidence IEA] GO_process : GO:0006813 - potassium ion transport [Evidence IEA] codon_start : 1 product : potassium channel, subfamily K, member 12 protein_id : NP_954859.1

clone name	MSMg01-096M09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-207I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078E06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-515A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204F21
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-371N18.T7 (MSMg01no371_n18.b1)	MSMg01-371N18.TJ (MSMg01no371_n18.g1)
ACC	AG478262	AG478263
length	825	779
length of high quality (start - end)	254 (76 - 329)	454 (46 - 499)
definition	CHROMAT_FILE: MSMg01no371_n18.b1 PHD_FILE: MSMg01no371_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:28 2005	CHROMAT_FILE: MSMg01no371_n18.g1 PHD_FILE: MSMg01no371_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:28 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACATAAATA AACTCTGTCTCAAAACCAAAGGAAACCAAACCAAATCAAAAGCCCTCAAA CAAAACAGAAAGAGCGTCCATTACAATGGACTGTGAAATCTAAGTTGTAT AATGAGCAAAGAAAAATAATGAAGACATGATCATCAATGAAAGCAAAGGG TGGGGTAGGAAGTTGTATGATTCTTGAGTCACTTAATGATCAGAGAGAGG GGACCAAGAAGAGAAAGAGAGAGAGGGTTAGGGGGAGGTATTTTTTTNTT TTTTTGTTGTTGTGTTGTTTTGTTGTTTTTTTGNTGTGTTTTTGTTTTTT TTTTTTTTGANTTTTTTGTGTTGTGNNTGTTTGTGTTTTTGTTTGTTTTT GTGGTTTTTTTTTGTTTGTGTATTTTTTGTTGGGGGTTTGTTGTGTTGTT TGTGTTTTTGGTGGTTTTTGTGTTGTTGTTGTTTTTTGTTTGTGTGNTTT TTTTTGTTTTGTTTATGTTTGTTTTGTTTTTTTTTGTNTTTGTTTGTTTT TTTTTTTGTTTTGTTTTGTTTTTTGTTGTTTGTGTTTTTTGTTGTTTTGT TTTTGNGTTTGGTGGGTTGTTGTGGTTTGTGTTTTTTTTTTTTGTTTTTT GTTTTATTTGTTTTTTTATTTTGTTTTTTGTATTNTTAGATTTTGTTTGA TTTTTTGATGTTTTGTGAATTTGTTATTTTTTGTGTTAAGTATATATTTG TATATTATTATTGTGTAAATATAAA	NGGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGC GGAATTCATTTTGTATTTGAGGAAGGCCTTGAACTCCTGATCCTCATACT TTTTGTTCCCTAGTTTTGGAAATTATAGATATATGTTAGCATGCTCTAGT ATTTTTCTGTTGTTGTGATAAGCCACTGACCAAAAGCAGCGTAGGGGAGG ATAAGCAGCTTTATGTGGCTCACACTCCAGGCTGTGGTCCATCAGGGAGG AAGGTCAGGGAGGAACTTGAGGCAGGACCTTGATGGAATACTCTTTGATG TCTTGCTTGTTTCTAGGCTTAAGCTTAGCTAGCTTATGGGATGGTGCTAC CCACAGTGGACGGGCCCTCCTGCATTGATTAACAATCAAGGTAGCCCCCA CTGACATGTCCATAGGCCAGTCTAAACTGAGAAATCCCTCAGTTTAGTTT TGCTTTTCTTCTCAGATGACTCTATGCTGTGTCAGGTTGACAATTAAGAC TAGGCCGGGCACTCCATACTTTGTCACTTAAGCACATCTCTGTAATACCA TAACCTTTCCTTTTTTTTTTGGCCCCTAAAATCCTGTTCCATTTTTTTCT AATTGGTTTTAGATTGGGCTTCTTTACTTTAATATCCATTTTATTATGTG GTTTATACCCTCTCCTTCTTTTTTCCCTCCCTTTTCTTTGCTTGTCCTTA TTCTGCATCTTTCCGGTTTCCATCTTATATCGGCTTACTACGAGCTTTGC GTGATTCTTCCTGTTACTTAATTTTCTCN
quality values	Open. Hide. 0 3 8 8 8 11 11 9 8 8 8 10 8 8 9 18 16 31 24 28 12 11 10 10 13 16 31 41 34 32 37 30 23 16 11 22 18 18 11 11 11 19 21 34 41 39 39 34 37 37 37 37 37 37 50 50 50 50 50 44 35 34 34 34 36 36 43 43 48 33 42 36 36 36 42 40 40 36 47 51 43 43 68 68 68 68 50 51 68 68 50 50 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 50 50 50 47 47 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 68 59 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 68 68 68 68 68 57 57 50 50 50 50 68 68 68 57 59 57 57 57 50 50 50 50 50 68 57 57 57 57 57 57 68 68 68 68 68 68 68 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 59 59 59 59 57 57 48 48 48 47 42 42 48 59 59 57 57 59 48 48 48 59 57 57 57 59 59 59 59 32 28 15 12 12 12 12 21 18 19 31 31 22 15 8 6 6 11 8 8 9 9 8 3 0 3 8 8 15 15 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 11 11 9 9 9 9 9 9 10 10 14 21 18 10 3 0 3 6 6 6 7 13 8 8 6 6 8 8 8 15 11 15 14 10 8 8 8 8 11 8 8 3 0 3 10 8 8 8 8 8 8 10 8 8 8 9 3 0 0 3 6 8 8 9 6 8 6 6 8 8 15 9 9 9 6 6 6 6 13 13 12 8 8 8 8 8 10 9 10 11 17 25 10 11 8 10 6 7 6 6 8 6 6 8 8 8 8 8 8 6 6 8 8 10 9 11 10 8 8 8 8 8 8 8 8 6 6 9 9 12 10 10 6 6 8 8 10 10 17 16 15 9 9 9 10 8 8 8 8 10 8 10 10 18 18 11 10 8 8 8 8 6 7 9 11 9 14 14 12 10 8 8 8 8 8 8 8 3 0 3 9 11 8 10 10 12 8 8 8 8 8 8 8 8 10 10 7 7 10 8 12 8 8 8 10 13 8 8 8 6 9 10 18 19 19 15 11 8 3 0 3 10 6 6 8 10 8 6 6 10 7 7 6 8 8 8 10 13 13 10 8 7 7 7 7 7 15 11 6 6 6 6 10 20 15 10 9 8 8 6 6 6 6 8 8 8 10 10 10 8 10 8 8 8 8 10 10 10 12 11 11 10 8 7 6 6 3 0 3 9 11 9 9 9 9 6 6 6 6 6 6 6 6 6 6 6 6 6 8 6 7 7 6 6 7 7 7 7 6 6 6 9 7 7 6 6 6 11 10 11 6 6 6 6 6 6 6 10 8 8 6 6 6 10 10 16 16 15 13 13 8 8 6 6 6 10 11 22 22 16 8 8 8 8 8 3 0 3 10 6 6 6 6 8 8 8 9 8 8 10 8 8 7 6 8 7 8 6 6 6 6 7 7 9 9 7 7 6 6 7 9 9 6 8 6 6 8 6 6 6 6 8 7 6 6 6 6 8 8 8 8 6 6 6 6 6 8 9 8 9 7 9 9 9 9 7 7 13 8 8 7 7 8 6 8 6 6 6 6 6 8 15 9 9 9 11 11	Open. Hide. 0 3 6 6 8 8 9 11 11 11 15 27 24 12 11 7 7 7 17 19 22 12 12 16 24 34 48 24 24 22 22 22 23 30 15 15 12 16 12 14 14 14 15 15 17 17 17 25 41 48 48 28 35 28 28 34 33 34 36 47 57 41 32 19 19 17 30 25 37 30 37 43 44 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 59 59 59 57 68 68 68 68 50 50 50 50 50 50 57 57 57 57 57 68 50 51 51 51 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 59 57 57 59 59 59 59 59 59 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 45 45 52 62 59 59 68 59 59 59 59 59 57 57 68 57 57 57 59 59 59 59 68 59 59 57 57 43 43 39 57 57 68 68 68 57 57 52 52 57 57 59 68 68 59 59 57 57 57 57 57 68 57 68 68 68 57 57 50 50 35 35 32 42 42 50 50 43 43 52 57 57 68 68 57 57 57 57 52 57 57 57 57 57 57 57 57 57 48 48 48 50 57 48 59 48 47 47 42 44 37 42 44 35 35 43 48 57 57 57 57 59 59 48 48 48 57 57 57 42 39 35 37 42 44 48 48 48 50 57 68 68 59 59 32 21 11 10 10 11 17 26 41 41 46 43 43 39 39 35 40 40 39 39 30 39 30 39 39 39 39 39 39 37 28 28 28 37 34 34 22 22 10 13 13 13 10 10 9 10 9 9 12 13 16 19 24 33 33 32 30 30 26 19 12 12 8 10 10 14 10 10 10 23 23 19 14 12 12 8 8 11 11 12 19 15 14 14 14 15 17 16 16 19 16 17 11 12 14 14 12 10 9 9 11 16 21 22 23 25 25 17 19 9 9 9 9 8 13 11 11 11 10 8 8 8 8 11 10 10 10 8 7 9 9 10 8 9 9 15 13 28 22 19 14 11 11 11 15 11 13 15 8 8 8 6 6 8 8 10 8 8 10 10 16 13 13 11 11 13 15 10 10 10 10 9 7 7 8 8 8 9 12 13 8 8 8 8 10 9 6 6 6 6 7 10 8 8 8 8 8 8 9 9 9 9 11 11 9 9 11 11 13 18 24 21 18 18 10 10 10 10 17 13 21 21 14 8 8 8 8 8 7 7 8 15 9 11 11 11 16 21 11 8 8 10 8 8 8 10 8 8 6 6 8 8 10 11 11 11 12 15 15 15 9 8 8 6 6 6 6 8 8 8 8 8 8 8 8 10 7 7 8 8 7 6 8 8 8 10 10 10 9 8 8 7 7 9 10 16 14 16 19 16 10 9 9 9 8 8 8 12 8 8 10 10 17 18 19 10 10 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no371_n18.b1 MSMg01no371_n18.b1 CHROMAT_FILE:
MSMg01no371_n18.b1 PHD_FILE: MSMg01no371_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:28 2005
         (254 letters)



>mm_chr17_87237103_87237756
          Length = 654

 Score =  487 bits (252), Expect = e-142
 Identities = 252/252 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacataaataaactctgtctcaaaaccaaaggaaaccaaaccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccagggctacataaataaactctgtctcaaaaccaaaggaaaccaaaccaaa 260

                                                                       
Query: 61  tcaaaagccctcaaacaaaacagaaagagcgtccattacaatggactgtgaaatctaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaaagccctcaaacaaaacagaaagagcgtccattacaatggactgtgaaatctaagt 320

                                                                       
Query: 121 tgtataatgagcaaagaaaaataatgaagacatgatcatcaatgaaagcaaagggtgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtataatgagcaaagaaaaataatgaagacatgatcatcaatgaaagcaaagggtgggg 380

                                                                       
Query: 181 taggaagttgtatgattcttgagtcacttaatgatcagagagaggggaccaagaagagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaagttgtatgattcttgagtcacttaatgatcagagagaggggaccaagaagagaa 440

                       
Query: 241 agagagagaggg 252
           ||||||||||||
Sbjct: 441 agagagagaggg 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information