BAC Information

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BAC

Clone NameMSMg01-373H02
Chromosome17 (Build37)
Map Location 28,685,163 - 28,888,080
singlet/doubletdoublet
Overlap geneGm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318
Upstream geneHmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik
Downstream geneMapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373H02.T7 (MSMg01no373_h02.b1)MSMg01-373H02.TJ (MSMg01no373_h02.g1)
ACCAG479472AG479473
length732725
length of high quality
(start - end)		552 (12 - 563)557 (56 - 612)
definitionCHROMAT_FILE: MSMg01no373_h02.b1 PHD_FILE: MSMg01no373_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:24 2005CHROMAT_FILE: MSMg01no373_h02.g1 PHD_FILE: MSMg01no373_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,685,163 - 28,685,703)(28,887,574 - 28,888,080)
sequence
ACCTATATCGAGAGGATCCGCGGAATTCCTTACTCTTACCTCTTGGTAAT
GAAGGAAGGAGCCTTCACTGGCAAAGGGGTTGGGTAGCAATGTGGTCAGA
CTCATGGGGGTAGGGGGAGGTAAGGACAAGGCTTGAGGTCAGAGAACGCA
TGCATCTAGCCCGCATATGAATAGCTTTAGTAGAACACTAGCTCCTGGCT
TCCCTGAGGCTGTGTGAGTGTATCTCACCTGAACACAGAGGTTGCACAGA
ACTCTCTCTGGCCCTGCTGAGGAATTCCCCTGCCGTAGACCATCTTTCTA
GAAATAGTACCCTGCTTTAGGAGTCAGGCTATGGAACAACATACCTGGCG
ACTCGGTAGGATTGTCAACCTGTGTCCAGGGGTGACTACAGGGGTTAAAG
GTCAGCCAGGTCTGGAGACCAGCTGTGTCAGCTCAGGAAGCTTTCTGAGA
CCTGTGGGCCAGCACGGCCGGCAGAAGGGATGAGAACACACTGCATATTC
CAGCCCTGCCCCGCCACAGGAATGTGTATAGGGACGGTGTGGGTGGCTCG
AATTTAGCACCAGCTGTCCTTCAAGTCTGCTGTCCTCGCAGATTAGGACA
ACCAGCCTCGTCCTGTATTTAGGGTCGCAGGCTATTAGTCCCTGTTTCCA
TAACTAGTCCCGATATATCATACCTTTTCTCCAAAAAAGCCACTGCCACC
TGGGCCTCCTGGTCCCTTTCAAGCTTTCTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTCTGTAGACTGAGGCTGGCCTTGAACTCTAAACTGCCTTCCCC
TGTCTCCCAAGTGCTGGCATGCACCACTAGGTCCAGTTGGGAACCTTTCT
TTCTGGTATACCAAGCCACCTCTCCAAGTTACAGCAGGCTACAAGATGTT
GACCTTCCATGTATTCTCAAGAACAGAGGCACGGGACTCCTGCATGACTT
TATTTTACACTGGGGATGCTACTGCCAACTGGTAGTATCTAGAGACCTCT
GTGGCTGTTACAAATCAGGGAAGGAAGCGTGGTTGCTGCTGGCATCTAGT
GGGCGGAAGCATGGGTGGGGACTACTTGGTGGCCTGCAAAGGAGGGTTCT
ATGACTAACGATATTCTGGCTGAGATGTCATCAGTGGCTAAGTTGGAAAC
TCTTGCTTCAGATCCCTCAGAACACTGGTTGTGGGAAAGAAGCCACTTCG
CCCTCCCCTCCGGGGTAAGGCTCCTGCAGCTAGGGAGCTAGATGTAGGCT
GTCCCACAAAGGGCTATGAGGGATAGGTCCCCAGACCAGGTGGATTTTAA
AGATCTTCCTGGNTGATTACAAACCAGTTGTAGACAAAAGTCATAGGCGC
TGCAGAGGCTTCCGGGGGTGTCACTCAACATGATTTAAACCCAGGGTTCC
CGAATTATGGCTTTCTAATGTTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_h02.b1 MSMg01no373_h02.b1 CHROMAT_FILE:
MSMg01no373_h02.b1 PHD_FILE: MSMg01no373_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:24 2005
         (552 letters)



>mm_chr17_28684952_28685903
          Length = 952

 Score = 1031 bits (533), Expect = 0.0
 Identities = 539/541 (99%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattccttactcttacctcttggtaatgaaggaaggagccttcactggcaaaggggttg 71
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 212 gaattccttactcttacctcttggtaatgaaggaaggaaccttcactggcaaaggggttg 271

                                                                       
Query: 72  ggtagcaatgtggtcagactcatgggggtagggggaggtaaggacaaggcttgaggtcag 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggtagcaatgtggtcagactcatgggggtagggggaggtaaggacaaggcttgaggtcag 331

                                                                       
Query: 132 agaacgcatgcatctagcccgcatatgaatagctttagtagaacactagctcctggcttc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agaacgcatgcatctagcccgcatatgaatagctttagtagaacactagctcctggcttc 391

                                                                       
Query: 192 cctgaggctgtgtgagtgtatctcacctgaacacagaggttgcacagaactctctctggc 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cctgaggctgtgtgagtgtatctcacctgaacacagaggttgcacagaactctctctggc 451

                                                                       
Query: 252 cctgctgaggaattcccctgccgtagaccatctttctagaaatagtaccctgctttagga 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cctgctgaggaattcccctgccgtagaccatctttctagaaatagtaccctgctttagga 511

                                                                       
Query: 312 gtcaggctatggaacaacatacctggcgactcggtaggattgtcaacctgtgtccagggg 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gtcaggctatggaacaacatacctggcgactcggtaggattgtcaacctgtgtccagggg 571

                                                                       
Query: 372 tgactacaggggttaaaggtcagccaggtctggagaccagctgtgtcagctcaggaagct 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgactacaggggttaaaggtcagccaggtctggagaccagctgtgtcagctcaggaagct 631

                                                                       
Query: 432 ttctgagacctgtgggccagcacggccggcagaagggatgagaacacactgcatattcca 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttctgagacctgtgggccagcacggccggcagaagggatgagaacacactgcatattcca 691

                                                                       
Query: 492 gccctgccccgccacaggaatgtgtatagggacggtgtgggtggctcgaatttagcacca 551
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 692 gccctgccccgccacaggaatgtgtatagggacggtgtgggtggctcgaagttagcacca 751

            
Query: 552 g 552
           |
Sbjct: 752 g 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_h02.g1 MSMg01no373_h02.g1 CHROMAT_FILE:
MSMg01no373_h02.g1 PHD_FILE: MSMg01no373_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:24 2005
         (557 letters)



>mm_chr17_28887574_28888530
          Length = 957

 Score =  980 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagactgaggctggccttgaactctaaactgccttcccctgtctcccaagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 actctgtagactgaggctggccttgaactctaaactgccttcccctgtctcccaagtgct 448

                                                                       
Query: 61  ggcatgcaccactaggtccagttgggaacctttctttctggtataccaagccacctctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggcatgcaccactaggtccagttgggaacctttctttctggtataccaagccacctctcc 388

                                                                       
Query: 121 aagttacagcaggctacaagatgttgaccttccatgtattctcaagaacagaggcacggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aagttacagcaggctacaagatgttgaccttccatgtattctcaagaacagaggcacggg 328

                                                                       
Query: 181 actcctgcatgactttattttacactggggatgctactgccaactggtagtatctagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 actcctgcatgactttattttacactggggatgctactgccaactggtagtatctagaga 268

                                                                       
Query: 241 cctctgtggctgttacaaatcagggaaggaagcgtggttgctgctggcatctagtgggcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cctctgtggctgttacaaatcagggaaggaagcgtggttgctgctggcatctagtgggcg 208

                                                                       
Query: 301 gaagcatgggtggggactacttggtggcctgcaaaggagggttctatgactaacgatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaagcatgggtggggactacttggtggcctgcaaaggagggttctatgactaacgatatt 148

                                                                       
Query: 361 ctggctgagatgtcatcagtggctaagttggaaactcttgcttcagatccctcagaacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ctggctgagatgtcatcagtggctaagttggaaactcttgcttcagatccctcagaacac 88

                                                                       
Query: 421 tggttgtgggaaagaagccacttcgccctcccctccggggtaaggctcctgcagctaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  tggttgtgggaaagaagccacttcgccctcccctccggggtaaggctcctgcagctaggg 28

                                      
Query: 481 agctagatgtaggctgtcccacaaagg 507
           |||||||||||||||||||||||||||
Sbjct: 27  agctagatgtaggctgtcccacaaagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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