Query= MSMg01no373_k22.b1 MSMg01no373_k22.b1 CHROMAT_FILE:
MSMg01no373_k22.b1 PHD_FILE: MSMg01no373_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:41 2005
(472 letters)
>mm_chr17_47564503_47565374
Length = 872
Score = 561 bits (290), Expect = e-164
Identities = 347/382 (90%), Gaps = 29/382 (7%)
Strand = Plus / Minus
Query: 6 ggaattcaaccttcct-ttctcctctggagaatcgactagactccagactcccttctgac 64
|||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||
Sbjct: 356 ggaattcaaccttcctctt-tcctctggagaagcgactagactccagactcccttctgac 298
Query: 65 aggacccaggaacacttgcttagcttgtgttgagaggtgtgaacgaatggtgtctgccct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aggacccaggaacacttgcttagcttgtgttgagaggtgtgaacgaatggtgtctgccct 238
Query: 125 gaccaggaggtttgtgtttggtgctgggaagacatttgctttcctatttatttacacaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gaccaggaggtttgtgtttggtgctgggaagacatttgctttcctatttatttacacaca 178
Query: 185 cacacacacacacacacacacacacacacactcacacacacgcacatatttgagacagag 244
||||||||||||||||||||||||| |||||||||||||
Sbjct: 177 cacacacacacacacacacacacac----------------------atttgagacagag 140
Query: 245 tctcacaatgcaatgctggctaggaacttgtatggagatta--tttctccatactggcct 302
||||||||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct: 139 tctcacaatgcaatgctggctaggaccttgtatggagaccagg---ctccatactggcct 83
Query: 303 tgaactccgaaatccacccgccaccacctccccaatgctggaattaaagatgtgtgctac 362
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tgtactccgaaatctacccgccaccacctccccaatgctggaattaaagatgtgtgctac 23
Query: 363 catattttagtttgcacactta 384
||||||||||||||||||||||
Sbjct: 22 catattttagtttgcacactta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_k22.g1 MSMg01no373_k22.g1 CHROMAT_FILE:
MSMg01no373_k22.g1 PHD_FILE: MSMg01no373_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:41 2005
(275 letters)
>mm_chr17_47419375_47420049
Length = 675
Score = 503 bits (260), Expect = e-147
Identities = 272/276 (98%), Gaps = 2/276 (0%)
Strand = Plus / Plus
Query: 1 ttcacacttcattgggcccagcttcctgtctgggaagtccagtaggctatatcctgtgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcacacttcattgggcccagcttcctgtctgggaagtccagtaggctatatcctgtgtc 260
Query: 61 cctcccttccgaggcagaccccacccctgcctgttccttccatttcagctgccatctggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcccttccgaggcagaccccacccctgcctgttccttccatttcagctgccatctggc 320
Query: 121 tgaagggagcagcctctctgacttgggcttccaggcgcccatttgcaagggttcatttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagggagcagcctctctgacttgggcttccaggcgcccatttgcaagggttcatttct 380
Query: 181 gtttaatactgtggttccttcaaggctcagtcttggggcaggcaagatagtgcaag-aga 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 381 gtttaatactgtggttccttcaaggctcagtcttggggcaggcaagatagtgcaagta-a 439
Query: 240 tgaaaccccttgtctccaggcccgacaccccaggac 275
|||||||||||| |||||||||||||| ||||||||
Sbjct: 440 tgaaaccccttgcctccaggcccgacaacccaggac 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
