BAC Information

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BAC

Clone NameMSMg01-374B21
Chromosome17 (Build37)
Map Location 42,603,270 - 42,603,758
singlet/doubletsinglet
Overlap geneLOC627626
Upstream genenone
Downstream geneOpn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374B21.T7 (MSMg01no374_b21.b1)MSMg01-374B21.TJ (MSMg01no374_b21.g1)
ACCAG479988AG479989
length783757
length of high quality
(start - end)		492 (49 - 540)390 (57 - 446)
definitionCHROMAT_FILE: MSMg01no374_b21.b1 PHD_FILE: MSMg01no374_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:14 2005CHROMAT_FILE: MSMg01no374_b21.g1 PHD_FILE: MSMg01no374_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCTGTTAGACTGCAGAGCTGAGAGGTCTCTAATACATCTCC
AACAAATTGTAGATCCAGAAAAGCTAGTCTGAGTATAGTCCTACCTTGAC
ATTTAGACAGAGAGCAAATTCTTCCTTATTTTAAGCTTATCCTATTTAGA
GCTCAACCAAATTGAATGAGTCCCAACTATACTGAAGGCAGCATACTCAG
TCTGATGATTTAATCTCATTCTGAAACACTCAAGAAAACAGTGTAACAAT
TAACTGGGTTACAGTTCATTGACATACAAAATTATTCATCACATGATACT
AAGAAAATATTTTACATGTCCACTGAAAGTAACATATAATATACTGTTGG
GAATAAGTAAAATAAATATGTCATACAGAAGATATTCTATGGACATAATA
TACAGCATTCAGATATTTGAATATATTTACTGCATTGTCTAAATATCTCC
ATTATTATTCATATTTTGGTATGGCATGGACAGAACTCTAGACAGGAACA
AACGTATCCATGTGTTATGGGCAGTGATGGAAAAATCATGGCATGTGAGC
ACTTGTGTGTGGGAACAAAAATGGGGGCCTGGGGAAAAGGGGGGAAGGAG
GGATAACCATGTCTGGCCGAGTTCCCCCATGCTCTGGAAGGGGGATGCGG
GAGCTGGCCAAACTTTCCCTCCTTCCCGGAGGAATCCAAGCCCTGACTAA
CCAATGGGGGGGGAAAGGGGAGCCCCCAACCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCCTTGGGTATCAACACACCCTACTACATCAGGTCATTGCAGAA
CTACATGCATGCTCTCCAGACAAAGTGGCCCAGTTAGGGGAACAAGATCT
ATAGGTAGGCAACAGAGTCAGGGACAGTCCTGTTCCAGTTGTTTGGGGGC
TTAGGTCCAGCCCATGCTTTCTCTTTAGTTAGTACCTCAGTCTCTGGAAG
TCTCCAAAGTTCCAGGTTAGTTGACCCTGTTGGTCTTCCTGTGGAGTCCC
TATCCCCTTTGGATCTCTCAATCCTTCCCCTAACTCCTCCACAAGACTCC
CCAAGTTCCATCTAATGTTTGGCTGTGGGTCTCTGCAACTGTTTCCATCA
GCTACTGGGTGGAGCCTCTCAGAGAACAGTTATGCTAGACTCCTGTCTGC
TGGCATAACAGAGCATTATTTTTTTNATTCTAATTTTTTTTATTAGGATT
TTTCCTCTTTTACTTTGCAATGCTTTCCCAAAGTTCCCTATACGCTCCCA
CCACCTATTCTCCTTTTTTTGGCCTCGGTGTTCCCCCTGTTCTGGGCCTA
TTTATTTGTTGTTTTTTTTGGGCTGTCCTTCTCTAGGGGGGCCGCGCTAG
TGTTTTTTTTGCTTTTTGCTCTTTTCTTTCCATATCTCGTGTTCTGTCTG
TTTTTAATCCGGTCCCCTTTTGTTTGTTGCTTTTGTGCGCATGTTATCTT
CTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_b21.b1 MSMg01no374_b21.b1 CHROMAT_FILE:
MSMg01no374_b21.b1 PHD_FILE: MSMg01no374_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:14 2005
         (492 letters)



>mm_chr17_42603067_42603958
          Length = 892

 Score =  915 bits (473), Expect = 0.0
 Identities = 485/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttctgttagactgcagagctgagaggtctctaatacatctccaacaaattgta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttctgttagactgcagagctgagaggtctctaatacatctccaacaaattgta 263

                                                                       
Query: 64  gatccagaaaagctagtctgagtatagtcctaccttgacatttagacagagagcaaattc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatccagaaaagctagtctgagtatagtcctaccttgacatttagacagagagcaaattc 323

                                                                       
Query: 124 ttccttattttaagcttatcctatttagagctcaaccaaattgaatgagtcccaactata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttccttattttaagcttatcctatttagagctcaaccaaattgaatgagtcccaactata 383

                                                                       
Query: 184 ctgaaggcagcatactcagtctgatgatttaatctcattctgaaacactcaagaaaacag 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 384 atgaaggcagcatactcagtctgatgatttaatctcattctgaaacactcaagaaaaaag 443

                                                                       
Query: 244 tgtaacaattaactgggttacagttcattgacatacaaaattattcatcacatgatacta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtaacaattaactgggttacagttcattgacatacaaaattattcatcacatgatacta 503

                                                                       
Query: 304 agaaaatattttacatgtccactgaaagtaacatataatatactgttgggaataagtaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agaaaatattttacatgtccactgaaagtaacatataatatactgttgggaataagtaaa 563

                                                                       
Query: 364 ataaatatgtcatacagaagatattctatggacataatatacagcattcagatatttgaa 423
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataaatatgtcatccagaagatattctatggacataatatacagcattcagatatttgaa 623

                                                                       
Query: 424 tatatttactgcattgtctaaatatctccattattattcatattttggtatggcatggac 483
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 tatatttactgcattgtctaaatatcttcattattattcatattttggtatggcatggac 683

                    
Query: 484 agaactcta 492
           |||||||||
Sbjct: 684 agaactcta 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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