BAC Information

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BAC

Clone NameMSMg01-374H05
Chromosome17 (Build37)
Map Location 13,523,298 - 13,523,734
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b
Downstream geneLOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374H05.T7 (MSMg01no374_h05.b1)MSMg01-374H05.TJ (MSMg01no374_h05.g1)
ACCAG480244AG480245
length782772
length of high quality
(start - end)
441 (44 - 484)337 (59 - 395)
definitionCHROMAT_FILE: MSMg01no374_h05.b1 PHD_FILE: MSMg01no374_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:41 2005CHROMAT_FILE: MSMg01no374_h05.g1 PHD_FILE: MSMg01no374_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGGGGATTCCGCTGGTCCCAAAACACATCTGCCTTCCTGCCATCAG
GAAGATTATCCCAAAATCTTCCCAGGAGCTCCACTCCAGTCTTAAATCCC
CAGCCTGGGATGCTGAGGTAGTAACGGTCATGTGTGGGCTGACCACGTGG
TAGGCATTGCAGCATAACTGGTGTCCTAGTGTACCAGGAATCTTGGAGGA
GGGCCTTCCCTGCTTTACATGGGGCTAGACTGAGGCTCTCAAGGTCCCGT
GTTTCCAGCTTCCTATTCAAGAGTAGTTGGGCACCATGCTCACCTGCCCG
CCTTTCCTCCTACAGGGCGCCATGGCGGCCACCTACTTTGCTCTGAACAG
GACCCCACAGGCACCGAGGCTAGAGCCTGTGCTCTCATCTAGCTTGGCCC
AACGCAGAGGCATGAAGAGACTCACGTCTACCAGGTTGTAGTGGCCAGCC
AAGTCTCCAGCCTCAGTCGCCCTGCCCAACGTCCTCTCAGCCTCACAGAC
GCCAGATACAGGTCCTGTTCATGGGCACTTGAGTGCCCCTTGATCCCGCA
CAAATATGGATCTGGCCCTGGTTATCTCCTCTGTTTCCTTGTCGCCCTGG
TAAGGGTTCTGCCCTTAATGCCTGATTTTGTTTTGTCTACCTTCTCGCCC
GCTCTTCCTTTCCTTTGTGATTAATCCATCGGATTTTTTTACTTTTAATC
TCTTTTGTGGGGTCTCTTCTTTTTTTCACAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACAACAGCTCTGGCTTCCAGCATGAAATCTGCACCAAATCAA
GAATTGCACCCTGACTAACCCATCCCAGAAACATTGACAGTTGATGACAT
CCAGAAAAGAGTCATTCCTCCTGAAGGATGTAGCCCTGGTAGATCAACCA
CTCCAGTGGATGCCCCCACACTCATGAACATATGACAGCAGGTTATTAAA
ATAGGACATGAATTTTGTGGGTTGTTGGAGTGACTGTGGGGCTGCATCTG
GCATGAGTCAGGGAAGGGCAGGGGTTGACTAGGATCCAGATATATTTAAT
GGATATCTGAAGTTCTCAAAAAAATATTATGACATTTAAAAACCATAAAA
AAGCTGGGCAGTGGTGGCCCAACCTTTGATCCCAGCACTTGGGAGGCAGA
GGCAGGCAGATTTCTGAGTTTGAGGTCAGCCTGTCCTTCATAGTCTGTTC
CAGAACAGCCAGTGTTACACCGAGAAACCCTGTCTCTTTATTTTTTTTCA
TTGAACCCTATATTTACTTTCTTTTTTTACTTTAACCCCTTATAAAGCTC
ATCTATACCTATCTCTGTTTTTTTTGTAGTAATAACTCCCTCTCTATTTT
TTTTCTTTTTTCCCTTTTTTTTCCCTTTCTTTTTACCATATGGTATTTTA
ATTTACTCTTATTAAAAATTTTCCTATTTACACTTTTATTACTTCTTTTA
TGCCTATATTCCTATTCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_h05.b1 MSMg01no374_h05.b1 CHROMAT_FILE:
MSMg01no374_h05.b1 PHD_FILE: MSMg01no374_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:41 2005
         (441 letters)



>mm_chr17_13523094_13523934
          Length = 841

 Score =  818 bits (423), Expect = 0.0
 Identities = 434/439 (98%), Gaps = 4/439 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggggattcc--gctggtcccaaaacacatctgccttcctgccatcaggaaga 62
           |||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgggga--cccagctggtcccaaaacacatctgccttcctgccatcaggaaga 262

                                                                       
Query: 63  ttatcccaaaatcttcccaggagctccactccagtcttaaatccccagcctgggatgctg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttatcccaaaatcttcccaggagctccactccagtcttaaatccccagcctgggatgctg 322

                                                                       
Query: 123 aggtagtaacggtcatgtgtgggctgaccacgtggtaggcattgcagcataactggtgtc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggtagtaacggtcatgtgtgggctgaccacgtggtaggcattgcagcataactggtgtc 382

                                                                       
Query: 183 ctagtgtaccaggaatcttggaggagggccttccctgctttacatggggctagactgagg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 ctagtgtaccaggaatcttggaggagggccttccctgctttacatgggggtagactgagg 442

                                                                       
Query: 243 ctctcaaggtcccgtgtttccagcttcctattcaagagtagttgggcaccatgctcacct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctctcaaggtcccgtgtttccagcttcctattcaagagtagttgggcaccatgctcacct 502

                                                                       
Query: 303 gcccgcctttcctcctacagggcgccatggcggccacctactttgctctgaacaggaccc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcccgcctttcctcctacagggcgccatggcggccacctactttgctctgaacaggaccc 562

                                                                       
Query: 363 cacaggcaccgaggctagagcctgtgctctcatctagcttggcccaacgcagaggcatga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cacaggcaccgaggctagagcctgtgctctcatctagcttggcccaacgcagaggcatga 622

                              
Query: 423 agagactcacgtctaccag 441
           |||||||||||||||||||
Sbjct: 623 agagactcacgtctaccag 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)