Query= MSMg01no374_j05.b1 MSMg01no374_j05.b1 CHROMAT_FILE:
MSMg01no374_j05.b1 PHD_FILE: MSMg01no374_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:51 2005
(487 letters)
>mm_chr17_5407095_5407980
Length = 886
Score = 880 bits (455), Expect = 0.0
Identities = 476/483 (98%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 5 gaattcctgtatcctatccaggaataaaaagagcatcattaacccagactctctctacta 64
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 686 gaattcctgtatccgatgaaggaataaaaagagcatcattaacccagactctctcta-ta 628
Query: 65 gagtcctaccttgtaagctccttgagagtaggaccttgtaagtgtggcagtgtctgccac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gagtcctaccttgtaagctccttgagagtaggaccttgtaagtgtggcagtgtctgccac 568
Query: 125 aggggccatataggctgtactgatggctgccatgtgctgagaagaggagctgagggaggc 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 567 aggggccatataggctgtactgatggctgccatgtgctgagaagaagagctgagggaggc 508
Query: 185 tcaggatgcgatgagcttcacaggagttgaaggtacacgtgtccaaaaggatgaaggaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcaggatgcgatgagcttcacaggagttgaaggtacacgtgtccaaaaggatgaaggaaa 448
Query: 245 cttgcttctttggcacccctagtgttcaattagccctgtcccggcacttcacagccccat 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttgcttctttggcacgcctagtgttcaattagccctgtcccggcacttcacagccccat 388
Query: 305 gggagtaacctagcctgcatcaccttgttgatagggacagctttcctagaaggcttttgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gggagtaacctagcctgcatcaccttgttgatagggacagctttcctagaaggcttttgt 328
Query: 365 cttttaaaggcaaaaagaaaggaagggagatgagaccctaaaagagcaagcgagtgatat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cttttaaaggcaaaaagaaaggaagggagatgagaccctaaaagagcaagcgagtgatat 268
Query: 425 cactaaagtgtttttccatgggactcagctgccagagcatttagccatttatctatttct 484
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 267 cactaaagtgtttttccatgggactcagctgccagagcatttagccgtttatctatttct 208
Query: 485 ttc 487
|||
Sbjct: 207 ttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space: 417852
Effective search space used: 417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_j05.g1 MSMg01no374_j05.g1 CHROMAT_FILE:
MSMg01no374_j05.g1 PHD_FILE: MSMg01no374_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:51 2005
(331 letters)
>mm_chr17_5217586_5218317
Length = 732
Score = 542 bits (280), Expect = e-158
Identities = 316/332 (95%), Gaps = 9/332 (2%)
Strand = Plus / Plus
Query: 1 atctgtaaatctctgtgggctgtagagagtatgaggtttgttaaggatggagttaacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgtaaatctctgtgggctgtagagagtatgaggtttgttaaggatggagttaacttc 260
Query: 61 ttaatgggaacaggttaaagaatggttttgtccgttacagaca-ttttctgggactagct 119
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 261 ttaatgggaacaggttaaagaatggttttgtccgttgcagacatttttctgggactagct 320
Query: 120 gatgcgatgtttaatttccgccagtgaaacaggccctttgaacagggatgggcttaggat 179
||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct: 321 gatgcgatgtttaatttccatcagt----ca----ctttgaacagggatgggcttaggat 372
Query: 180 gaccagcaagactcctagtggccctttattccttaacctcccagggctgctgcaagcttg 239
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 gagcagcaagactcctagtggccctttattccttaacctcccagtgctgctgcaagcttg 432
Query: 240 agcagcagccaggaagcccctgctggagacagatggctacagcagtacgggggtggcgtg 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 433 agcagcagccaggaagcccctgctggagacagatggctacagcagtacgggggtggtgtg 492
Query: 300 cccatggctgcagtggcagagggcttgtgccc 331
|||||||||||||||| |||||||||||||||
Sbjct: 493 cccatggctgcagtggtagagggcttgtgccc 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space: 232806
Effective search space used: 232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
