Query= MSMg01no374_j11.b1 MSMg01no374_j11.b1 CHROMAT_FILE:
MSMg01no374_j11.b1 PHD_FILE: MSMg01no374_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:52 2005
(519 letters)
>mm_chr17_15278306_15279224
Length = 919
Score = 866 bits (448), Expect = 0.0
Identities = 511/558 (91%), Gaps = 43/558 (7%)
Strand = Plus / Plus
Query: 5 gaattcaggaggtttcccttctcttccagcccggttcagttttcagatgtcatctaaaac 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gaattcaggaggtctcccttctcttccagcccggttcagttttcagatgtcatctaaaac 221
Query: 65 ccaaccaaccaacaacagaaaacaacctgtcttgtaagcaagatctagagagaaacccca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ccaaccaaccaacaacagaaaacaacctgtcttgtaagcaagatctagagagaaacccca 281
Query: 125 gttcaaagtgcagcaatcaggtgtgtgttgcccttctgagtttctgatcaatcaggctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gttcaaagtgcagcaatcaggtgtgtgttgcccttctgagtttctgatcaatcaggctct 341
Query: 185 cccctaaagtttctcacagtcctagttgatcggacagtgtctccatatggctcatgcata 244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 342 cccctaaagtttctcacagtcctagttgagcggacagtgtctccatatggctcatgcata 401
Query: 245 cagtcctgaccaacacatggtgtctccacatgcctc-t---------------------- 281
||||||||||||||||||||| |||||||||||||| |
Sbjct: 402 cagtcctgaccaacacatggtatctccacatgcctcatgcatacaggcctgaccaacacg 461
Query: 282 ---tgt-t----------------tacactcctgaccaacacgtggtatctccacatgcc 321
||| | |||||||||||||||| |||||||||||||||||||
Sbjct: 462 tggtgtctccacatgcctcatgcatacactcctgaccaactcgtggtatctccacatgcc 521
Query: 322 tcatgcatacagtcttgaccaacatgtggtgtctccacatgcctcatgcatacagtcttg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tcatgcatacagtcttgaccaacatgtggtgtctccacatgcctcatgcatacagtcttg 581
Query: 382 attgaccaacactgtggtgtctccacatggctcatgccacactgtgtctctcagttctgg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 attgaccaacactgtggtgtctccacatggctcatgccacactgtgtctctcagttctgg 641
Query: 442 cactggcacaccttccttcctggccttccctgtgcatattcgtgcccccttggaattcag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cactggcacaccttccttcctggccttccctgtgcatattcgtgcccccttggaattcag 701
Query: 502 tagcatgttccatgagta 519
||||||||||||||||||
Sbjct: 702 tagcatgttccatgagta 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_j11.g1 MSMg01no374_j11.g1 CHROMAT_FILE:
MSMg01no374_j11.g1 PHD_FILE: MSMg01no374_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:52 2005
(425 letters)
>mm_chr17_15427405_15428229
Length = 825
Score = 598 bits (309), Expect = e-175
Identities = 339/351 (96%), Gaps = 4/351 (1%)
Strand = Plus / Minus
Query: 78 tttcatctctgctgtagggtgcttggagactccatccaagttctagaaaaa----tttgt 133
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 825 tttcatctctgctgtagggtgcttggagactccatccaagttctagaaaaatttgtttgt 766
Query: 134 ttgtttgtttatagaggcagggtctctggttgacctggaactcacatggagaccagattt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttgtttgtttatagaggcagggtctctggttgacctggaactcacatggagaccagattt 706
Query: 194 gccttgaactcccagagattcacctgcatttgtatttaactattgggattaaatgtgtgt 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gccttgaactcccagagattcacctgcatttgtatttaactattgggattaaatgtgtgt 646
Query: 254 accactatacatggcctgagaatgtatttttttatatctaggcttcctagcttagacagg 313
||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 645 accactatacatgacctggggatgtatttttttatatctaggcttcctagcttagacagg 586
Query: 314 gtgcaggcaatgaaggttggagcctggccccgcacaatgactcccggaccactggtgaca 373
||||||||||||||| ||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 585 gtgcaggcaatgaagtttggagcctggcctgggagaatgactcccggaccactggtgaca 526
Query: 374 tacagttctcggtccttcaggattttcctttctcgtccttgaactgttttg 424
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tacagttctcggtccttcaggattttcctttctcgtccttgaactgttttg 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
