Query= MSMg01no375_f03.b1 MSMg01no375_f03.b1 CHROMAT_FILE:
MSMg01no375_f03.b1 PHD_FILE: MSMg01no375_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:52 2005
(577 letters)
>mm_chr17_16739828_16740804
Length = 977
Score = 1069 bits (553), Expect = 0.0
Identities = 568/573 (99%), Gaps = 1/573 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttgtaaagacccttgtcgtaattgtacagaataattttgattaacatgatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gaattcatttgtaaagacccttgtcgtaattgtacagaataattttgattaacatgatta 545
Query: 65 tgaattattataaggtatatcattatatattctttattataatttgtatactcttcttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgaattattataaggtatatcattatatattctttattataatttgtatactcttcttct 485
Query: 125 ttgatctgctgcttatttgttattcggccagattctctttgtgtcttttaataaagccac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttgatctgctgcttatttgttattcggccagattctctttgtgtcttttaataaagccac 425
Query: 185 taatgccacaaaagagatttttcagattaatctaccaatgttgactaactagtggagttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taatgccacaaaagagatttttcagattaatctaccaatgttgactaactagtggagttc 365
Query: 245 agacttgtttaatgaagcattctgggatttctttttcccgggtctcatactaggactcag 304
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agacttgtttaatgaagcatcctgggatttctttttcccgggtctcatactaggactcag 305
Query: 305 cagggaagtgtgaaggattctcctttactgaactcctttcccaaaagccatgctggcatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagggaagtgtgaaggattctcctttactgaactcctttcccaaaagccatgctggcatt 245
Query: 365 tctagaacaacagtgagattctcctccatggttatttctcttactggctagtttgtgtca 424
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 244 tctagaacaacagtgagattctcctccatggttatttctcgtactggctagtttgtgtta 185
Query: 425 acttgacacagctggagttatcacagaaaaaggagcttcagttgaggaaacgcctccatg 484
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 184 acttgacacagctggagttatcacagaaaaaggagcttcagttgaggaaatgcctccatg 125
Query: 485 agatacaactgtaaggcattttctcaattagtgatcaaaggggaaaggccccttgtgggt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agatacaactgtaaggcattttctcaattagtgatcaaaggggaaaggccccttgtgggt 65
Query: 545 ggaccatctctgggctggtagtcttgggttcta 577
||||||||||||||||||||||||| |||||||
Sbjct: 64 ggaccatctctgggctggtagtctt-ggttcta 33
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_f03.g1 MSMg01no375_f03.g1 CHROMAT_FILE:
MSMg01no375_f03.g1 PHD_FILE: MSMg01no375_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:53 2005
(485 letters)
>mm_chr17_16610267_16611151
Length = 885
Score = 938 bits (485), Expect = 0.0
Identities = 485/485 (100%)
Strand = Plus / Plus
Query: 1 agtccaaaaccagaaagtagacacagaagttgctttaaagcatgtactaaagataccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccaaaaccagaaagtagacacagaagttgctttaaagcatgtactaaagataccatt 260
Query: 61 cattatgcatcctactcctcccactaatctgtatatttagtcttagatgttattgggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattatgcatcctactcctcccactaatctgtatatttagtcttagatgttattgggagc 320
Query: 121 catgatgcaagaagaatgtcttgtgtatgtatgcttatgtcacatatgtttccttcttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgatgcaagaagaatgtcttgtgtatgtatgcttatgtcacatatgtttccttcttaa 380
Query: 181 gtctccatgtctggcattcaagaccagagtacttgtcctctcttaattgcctacgtcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctccatgtctggcattcaagaccagagtacttgtcctctcttaattgcctacgtcctg 440
Query: 241 gacctaacaacagtatgtgccaaaaggccttgtaaattcatattaatcaagtctggaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacctaacaacagtatgtgccaaaaggccttgtaaattcatattaatcaagtctggaatc 500
Query: 301 tttaataatgctcatttttctcctcagatttcaaaattgtgtcccttgctagaaaaacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaataatgctcatttttctcctcagatttcaaaattgtgtcccttgctagaaaaacta 560
Query: 361 taagatcaaatactggtagcattccattataagtttgtactgtgagtgagaattcttgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagatcaaatactggtagcattccattataagtttgtactgtgagtgagaattcttgaa 620
Query: 421 agaaactgtatctgtaaagactgattgcaggtccagaacctagtaaccttatgtgaggct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaactgtatctgtaaagactgattgcaggtccagaacctagtaaccttatgtgaggct 680
Query: 481 agttt 485
|||||
Sbjct: 681 agttt 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
