BAC Information

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BAC

Clone NameMSMg01-376A15
Chromosome17 (Build37)
Map Location 57,649,960 - 57,650,495
singlet/doubletsinglet
Overlap geneEG224916
Upstream geneZnrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1
Downstream geneCntnap5c, LOC674419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376A15.T7 (MSMg01no376_a15.b1)MSMg01-376A15.TJ (MSMg01no376_a15.g1)
ACCAG481451AG481452
length748734
length of high quality
(start - end)
397 (138 - 534)534 (75 - 608)
definitionCHROMAT_FILE: MSMg01no376_a15.b1 PHD_FILE: MSMg01no376_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:50 2005CHROMAT_FILE: MSMg01no376_a15.g1 PHD_FILE: MSMg01no376_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGCCTGATGAATACCGAATGGCTGAGAAGCACCTGAAAAAAAT
GTTCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACGACCTTGAGA
TTCCACCTCATACCAGTCAGAATGAGTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCAAGTATGTGGAGAAAGAGGAACACTCTTCCATTGTTGGT
GGGATTACAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTC
AGAAAACTGGATATATTACTATCGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACAT
AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAAATGCCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTATATTTACACAATGGAGTAC
TACTCAGCTATTANAAAGAATGAATTTATGAAATTCCTAGGCAAATGATT
GGACCTGGAGGGCATCATCCTGAGTGAAGTAACACAATCACNAAAGAACT
CCCATGATATGTACTCACTGATAAGTGGATATTAGNCCAGAAACTTATTA
TACCCGAAGAATAAAATACATTTTGCAAAACACCTGAAAATGAAGAAGAA
CGAAAACCAAAGTGGGGACCCTTTGGCCCTCCTTAAATTGGAAAAAAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATATACTTCAAATTGAATTTTATTT
CTAAAGTCAGCGGAATTATTCATTTAAAACATGATTTTTTAAAAAAGGAA
ACTGTGAATTCAGGCATGAATGCATGTAATGATTTCATTAATATAAACAA
CTCTAATTATTTTCTAATAAAGAATTCTTTTTGTCAGTCTGTCAGACAAT
CTTTAGGTATAGAATATACTAGGAAGTTGTATTGTGAAGAAAGCCTGGAT
AACACTTTAATAGTGTTTAGGTGAATTATAATAACCACTCATTAGAAGTA
ACCTGCCCCAGAAACCTAGTACTACATTCCAAACAGAGATCTCACTAATC
TCCTTTTAAGTTAACTGTTTAATAAATAAAAATACCAAGACAACTTTATT
ATTTAATTTTGGCAGACCTTAAAAGAAGAAACAAAACCTATCTTTTTGAA
GATATATTTTTTTATTAGGTATTTTCCTCATTTACATTTTCAATGCTATC
CCAAAGGTCCCCCATACCCACCCTCCCAATTCCCTAACCACCCACTCCCC
CTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAAGTTGAAAGT
CCCATGGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCCTCTTTTGATAC
TTATGCAGCTAAAAAACAAACTCTGGGGTAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_a15.g1 MSMg01no376_a15.g1 CHROMAT_FILE:
MSMg01no376_a15.g1 PHD_FILE: MSMg01no376_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:50 2005
         (534 letters)



>mm_chr17_57649760_57650693
          Length = 934

 Score =  934 bits (483), Expect = 0.0
 Identities = 523/537 (97%), Gaps = 4/537 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatacttcaaattgaattttatttctaaagtcagcggaattattcatttaaaacatga 60
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 201 catatacttcaaattgaattttatttctaaagtcagtgggattattcatttaaaacatga 260

                                                                       
Query: 61  ttttttaaaaaaggaaactgtgaattcaggcatgaatgcatgtaatgatttcattaatat 120
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttt-taaaaggaaactgtgaattcaggcatgaatgcatgtaatgatttcattaatat 319

                                                                       
Query: 121 aaacaactctaattattttctaataaagaattc-tttttgtcagtctgtcagacaatctt 179
           ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 320 aaacaactctaatcattttctaataaagaattcttttttgtctgtctgtcagacaatctt 379

                                                                       
Query: 180 taggtatagaatatactaggaagttgtattgtgaagaaagcctggataacactttaatag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taggtatagaatatactaggaagttgtattgtgaagaaagcctggataacactttaatag 439

                                                                       
Query: 240 tgtttaggtgaattataataaccactcattagaagtaacctgccccagaaacctagtact 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtttaggtgaattataataaccactcattagaagtaacctgccccagaaacctagtact 499

                                                                       
Query: 300 acattccaaacagagatctcactaatctccttttaagttaactgtttaataaataaaaat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acattccaaacagagatctcactaatctccttttaagttaactgtttaataaataaaaat 559

                                                                       
Query: 360 accaagacaactttattatttaattttggcagaccttaaaagaagaaacaaaacctatct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 accaagacaactttattatttaattttggcagaccttaaaagaagaaacaaaacctatct 619

                                                                       
Query: 420 ttttgaagatatatttttttattaggtattttcctcatttacattttcaatgctatccca 479
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 ttttgaagatatattttttaattagttattttcctcatttacattttcaatgctatccca 679

                                                                    
Query: 480 aaggtcccccatacccaccctccc--aattccctaaccacccactccccctttttgg 534
           |||||||||||||||||||| |||  ||| ||||| |||||||||||||||||||||
Sbjct: 680 aaggtcccccatacccacccccccccaatcccctacccacccactccccctttttgg 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)