BAC Information

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BAC

Clone NameMSMg01-376L06
Chromosome17 (Build37)
Map Location 74,132,454 - 74,132,968
singlet/doubletsinglet
Overlap genenone
Upstream geneYpel5, Lbh, Lycat, LOC668709, Capn13, LOC100043666, Galnt14
Downstream geneEhd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376L06.T7 (MSMg01no376_l06.b1)MSMg01-376L06.TJ (MSMg01no376_l06.g1)
ACCAG481958AG481959
length7611,320
length of high quality
(start - end)		515 (69 - 583)---
definitionCHROMAT_FILE: MSMg01no376_l06.b1 PHD_FILE: MSMg01no376_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:39 2005CHROMAT_FILE: MSMg01no376_l06.g1 PHD_FILE: MSMg01no376_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGGATCCGCGGAA
TTCAGACACAGAATCTCTTACTACATTTATGACACTTTCAAAAACAGCAG
AAAAAAACAATCTACGTGTTAGAAATCAGCTTAGTGGTTTACCCTGGAGG
TGAAGCGATTTATCACCAAAGCAATTACACCCCTAATAGTTAAATCAATT
CTATTCTTTCCCTATTGATTGTTTTGATGGTCAGAAGAGAGGTTTACAAA
AAGAGTTTGAAATGTAATAAATTCAATTCATTTTTAAACAAGGCTTTATT
GAGTACCTCCCTATAGATGGAGGTCGCCATAAATCAGAGGGCATAGAAAG
AAGTAGATAAAATTTCCGCAGCCCAGGATCTCACAGTCCATTGATGGAAG
TCACATTTAGACAGTCCCCTTTCTCTTTACTTCGAGGTACTCTCTCTGTG
TAATGGCTGTACCTAACCTGTTCAAGAACTTTCATTCAAAGATGCTCTTA
CCCTCTTGAGCCTGAAGATGGTTCCATGTTGAAAACATAGCTTAAGGTGA
CATTCAGTCATAGCCACAAGCTCCAAAAGGTTTCAGTTGGCATTTCTGGC
ACAAAATATTTAATCATATCCAAGCTGGCTCCCATACACCAAGTATCACT
TTCTGGCTTTCTAAAGAGAGAGTCAAAAGCTGACCTGAGAAGCAGATGAA
TTGCTCCCACATCCTTCAGAGAATTGAGAAATGGATTCCACCATCTAAGA
CTAGAAAAAGG

CTTATATATTCAATGTATNCGCTACAATTTCGTAGGGNNNCNNNTCGCAG
TGTACCCGCATCACAATNAGTGGCGATATGAAGGCGGAGTAACAANAAAA
GAGAGACTACGTCCGGCGGAAAATAATATACTATCTGGAGAGCAGCAGNA
CTTAGCAGATGCCGCGACGCGTACACCTCTCCTAGACACTCAGTAACCCT
CGCACACCACCACCACCACATTCCCCACCTCTCCACCCACCAACGCGCGT
CCATCGTTCGACAGGGCGCTTGTGTATTATCGCACGACCACATGCAGTAA
AAGTAGTCCTATCAGGCAACATCAGATAGAACGAATACCACTATATGCTT
TCGATACATCTCGACGCAGCGTATGCCCCCTGCTGCAGATCGTGCTATAC
AAACACTAGCCCGTCACCGGCTCAACACCAGCCCATAGGCCTCGTTCTGA
TTTTCCAGATCAGGCCTGCCACCCGTCACAGATTCGCACATTATTTGTTC
CTTAGACATCCGAATTACCTTGATATGCTCCACGTCACGACCCCTTTGTC
CGCGTTCCCCCACTTCTCCTCGATTAGCTCTCTCACTCACGTCTAATCCC
AACACCCTTTGCTACCCAGAGTGACAGCTCGCACCACCTCTCTCCTCCTA
ACTCTTGCTTCATAAACGACGTGCCTATCTACGCTCACATCCTGTTCAGC
ACCATCTCTCCTCCCACGACCTCAAATAGTAACACGTACTCCGCTACACC
AATCGCACCTGCCTGTCACACATTGCTAGCGTAGGATATACGATCATTGA
GTCACCACCTTTGAGACATATTATACACATTAGTAACTACGGCGTGACGC
CAGCGATGTATACGTAATCGCGCTAAATACGCTATACACACGACAGTAAC
TATCGATACTGGCACACCCCCTCCACGCCTAGACACACCCTCGCAGGGCG
GCCCTATTCGTCCGATAGACCCCGTTTTCTCCACCGCTGCAATTCATTGA
TTCGTGAGGACCGAGCCCACGTCAGATACGTATCGCGAACAATCGAATCC
TATATACCGTCTTAATCAACCAGCATACGGTTCTCGCGCCGCTCCGCATT
ATCGCACGATTAGTTTTCCTCTCCCTGCTCTCATAATCACTTATCTTTTT
TTGTGCGTCCTGTTCTTCCTCGCCTACTACCACGATATCTATCCCTCGTC
GCGTGATAAGCGCCCGGATCATGGTTACTATGATCAATAAGCATACATCT
CCTACATAGTAAGCCCTCGTGGATGAAGGATGTATCCATAGTAACGACCG
CGCATCTGTGCGCGCATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_l06.b1 MSMg01no376_l06.b1 CHROMAT_FILE:
MSMg01no376_l06.b1 PHD_FILE: MSMg01no376_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:39 2005
         (515 letters)



>mm_chr17_74132254_74133168
          Length = 915

 Score =  957 bits (495), Expect = 0.0
 Identities = 510/515 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactacatttatgacactttcaaaaacagcagaaaaaaacaatctacgtgttagaaatca 60
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactatatttatgagactttcaaaaacagcagaaaaaaacaatctacgtgttagaaatca 260

                                                                       
Query: 61  gcttagtggtttaccctggaggtgaagcgatttatcaccaaagcaattacacccctaata 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttaatggtttaccctggaggtgaagcgatttatcaccaaagcaattacacccctaata 320

                                                                       
Query: 121 gttaaatcaattctattctttccctattgattgttttgatggtcagaagagaggtttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaaatcaattctattctttccctattgattgttttgatggtcagaagagaggtttaca 380

                                                                       
Query: 181 aaaagagtttgaaatgtaataaattcaattcatttttaaacaaggctttattgagtacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagagtttgaaatgtaataaattcaattcatttttaaacaaggctttattgagtacct 440

                                                                       
Query: 241 ccctatagatggaggtcgccataaatcagagggcatagaaagaagtagataaaatttccg 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ccctatagatggaggtcgccataaatcagtgggcatagaaagaagtagataaaatttccg 500

                                                                       
Query: 301 cagcccaggatctcacagtccattgatggaagtcacatttagacagtcccctttctcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcccaggatctcacagtccattgatggaagtcacatttagacagtcccctttctcttt 560

                                                                       
Query: 361 acttcgaggtactctctctgtgtaatggctgtacctaacctgttcaagaactttcattca 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttcgaggtactctctctgtgtaatggctgtacctaacctgttcaagaactttcattca 620

                                                                       
Query: 421 aagatgctcttaccctcttgagcctgaagatggttccatgttgaaaacatagcttaaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagatgctcttaccctcttgagcctgaagatggttccatgttgaaaacatagcttaaggt 680

                                              
Query: 481 gacattcagtcatagccacaagctccaaaaggttt 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 681 gacattcagtcatagccacaagctccaaaaggttt 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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