BAC Information

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BAC

Clone NameMSMg01-377A05
Chromosome19 (Build37)17 (Build37)
Map Location 37,543,856 - 37,543,98123,867,674 - 23,868,043
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex
Downstream geneExoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377A05.T7 (MSMg01no377_a05.b1)MSMg01-377A05.TJ (MSMg01no377_a05.g1)
ACCAG482194AG482195
length781759
length of high quality
(start - end)
141 (315 - 455)370 (81 - 450)
definitionCHROMAT_FILE: MSMg01no377_a05.b1 PHD_FILE: MSMg01no377_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:03 2005CHROMAT_FILE: MSMg01no377_a05.g1 PHD_FILE: MSMg01no377_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:03 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,543,856 - 37,543,981)(23,867,674 - 23,868,043)
sequence
TTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCGAGAGGATC
CGCGGAATTCAACCATTTTCCTCCAGTATATCCCTCTTAGAAAGAGTAGC
TGGAGCTTCTCTATAAGGCTTGTTATGATGAAGGCTTAATGATTCTCGCT
TAGGATGTGAGAGGACTTGGATGAGTCCTCTTCTTTTAGTCAATGCACAC
TGTGAGAATTACACAGCAATCGTGGCTGCTTAGAAGGTATGACTAATCTA
ATGAAAATGGAAATCCGTAAGTACTCAAAGTGGGTTTTGTTGTTGTTGTT
GATGATGTAGTTCTCAAATCCTGTATTTTCAGGACTTTGAGTATTATTTG
TGCAAGGGATGCTGGAATCCCTACCCTCAGGAGCTTCTAGTCCAGCTAGA
GTAAATTACCATATAAATGCATATGCAGTTATATGCAAACGAAACATTTG
CATGGATTACTCCAAAGGAAGGCTTTGATGGTGTCAAAGACCCTTAGAGA
CAGCTCCTTTGATGAACTGACTTGAACTCCTTGGTCCGAACACCATATTA
TTTCACTCTAGGAACTCACTTCCCCATGTTCCCCTGACCCTTATTTTCTC
AATGCTTTCTCGCTTATTTATTTTCTCTCTCTCTTGCCTGTTTTATATTT
CAACATTTCCCTGAAGTTTTTATTTTCCTTTTTTCCCCCTCCCTCTTTCC
TCTTTTCCCTTCATCCCTTTTTTCTTTTGTTTTTTTTTCCTACTCTTTTT
TTATTTTCCCCTACCTCCCCTTGTCGTTTTN
NNNNCCGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCAACATGATTTATAT
GAGAACTTGCTCCAAAAAAACCCCAACCAACAACAACAACAACAACAAAA
AAAAACCAAAACCAAAACCAAACTGAAAGATAACTGAGCAGGTGAAAAAC
GCTTGCCTTGCAAGCCTGACAACCAGCCACATCCATGTGATTGCACACCT
CACCCTGGTAATAATACATCTCTTTTAATGAAAGAAAGCTTTAGGTCTTA
GCTGAGGGGCTGGGCATGGTATGCATTCCTGTGATTCCAGCAGGGGACAG
TGGAGCATGAAGGCCACAGATCTGACAGCAGCCTGGACCACATATCCAGA
TTTTGTCTCAAAAAGAAGGAAGAAGGAGCTAGAGAGGTAGCTGAGCCGTT
AAAAGGAGTGACTGCTCTTCCAGGATTTTCAGCACCCACATGGCTGCCAG
GGGAATCTGACACCCTCTTTTTGGCCTCCACCCACATTACTCACTTATAA
AACATAGGCATACATTCAGGCGAAACACCCATACATATAATGTAAATAAA
CAAACAAGCCACTAGGAATACATGCCTGGCCCGATGCCTTTAAACCCCCC
CTTCCGGAGGAAAAAAACCTTTATAAAGGTGAAGACCATTCATCCCTCCC
ACAAAGATTCCTTTTAACCCGGGTTTATTAATAAATGAAACCCCGCCTAG
AAAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_a05.b1 MSMg01no377_a05.b1 CHROMAT_FILE:
MSMg01no377_a05.b1 PHD_FILE: MSMg01no377_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:03 2005
         (141 letters)



>mm_chr19_37543641_37544181
          Length = 541

 Score =  244 bits (126), Expect = 2e-69
 Identities = 126/126 (100%)
 Strand = Plus / Minus

                                                                       
Query: 16  caggactttgagtattatttgtgcaagggatgctggaatccctaccctcaggagcttcta 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 caggactttgagtattatttgtgcaagggatgctggaatccctaccctcaggagcttcta 282

                                                                       
Query: 76  gtccagctagagtaaattaccatataaatgcatatgcagttatatgcaaacgaaacattt 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtccagctagagtaaattaccatataaatgcatatgcagttatatgcaaacgaaacattt 222

                 
Query: 136 gcatgg 141
           ||||||
Sbjct: 221 gcatgg 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no377_a05.g1 MSMg01no377_a05.g1 CHROMAT_FILE:
MSMg01no377_a05.g1 PHD_FILE: MSMg01no377_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:03 2005
         (370 letters)



>mm_chr17_23867548_23868317
          Length = 770

 Score =  700 bits (362), Expect = 0.0
 Identities = 368/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaccaacatgatttatatgagaacttgctccaaaaaaaccccaaccaacaacaacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aagaccaacatgatttatatgagaacttgctccaaaaaaaccccaaccaacaacaacaac 437

                                                                       
Query: 61  aacaacaaaaaaaaaccaaaaccaaaaccaaactgaaagataactgagcaggtgaaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aacaacaaaaaaaaaccaaaaccaaaaccaaactgaaagataactgagcaggtgaaaaac 377

                                                                       
Query: 121 gcttgccttgcaagcctgacaaccagccacatccatgtgattgcacacctcaccctggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gcttgccttgcaagcctgacaaccagccacatccatgtgattgcacacctcaccctggta 317

                                                                       
Query: 181 ataatacatctcttttaatgaaagaaagctttaggtcttagctgaggggctgggcatggt 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ataatacatctcttttagtgaaagaaagctttaggtcttagctgaggggctgggcatggt 257

                                                                       
Query: 241 atgcattcctgtgattccagcaggggacagtggagcatgaaggccacagatctgacagca 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgcattcctgtgattccagtaggggacagtggagcatgaaggccacagatctgacagca 197

                                                                       
Query: 301 gcctggaccacatatccagattttgtctcaaaaagaaggaagaaggagctagagaggtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gcctggaccacatatccagattttgtctcaaaaagaaggaagaaggagctagagaggtag 137

                     
Query: 361 ctgagccgtt 370
           ||||||||||
Sbjct: 136 ctgagccgtt 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)