BAC Information

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BAC

Clone NameMSMg01-377N01
Chromosome17 (Build37)
Map Location 21,070,141 - 21,070,648
singlet/doubletsinglet
Overlap geneLOC627884
Upstream geneLOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4
Downstream genePpp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377N01.T7 (MSMg01no377_n01.b1)MSMg01-377N01.TJ (MSMg01no377_n01.g1)
ACCAG482808AG482809
length756771
length of high quality
(start - end)
497 (50 - 546)157 (83 - 239)
definitionCHROMAT_FILE: MSMg01no377_n01.b1 PHD_FILE: MSMg01no377_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:08 2005CHROMAT_FILE: MSMg01no377_n01.g1 PHD_FILE: MSMg01no377_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAATACACCCTGAAGTGAGAGCACTATTCCTATTGCCAAG
TTCCTGGACCCCATTTTGTCATCCATCACTTTTCTGTTTAAGTCATTTAA
AAAACAAAACAAAACAAAACAAACAAACATGCTTCAATAAAACCTTTCAC
TGAACATTCCCAAACTTGAATATGTATGTGAGAGATTGCAAAACTATAGT
CTGCAGCATAGCAAGACTGTTTCAGAGCAAACAATTTTGTCATCATTAAT
AACTTTCAGTGAGTCTTTATATATTTCTGATATTAGCCATTTGTCAGATG
TAGCATTAGTGAAGATCTTTTCCTAATCTGTATATTGCCATTTGGTCCTA
TTGACAGTATTTTTTGTCTTACAGAAGCATTTTAGTTTTCAAATTAAATA
ACCCAATTAAAATGGGGTATAGAGATAAACAGAAAATTCTTAACAAGAGG
AATTGCATGTGGTTAAGACTCACCTAAAGAAATGTTCAATATCCTTAGTC
ATCAGGGAAATGCAAATTAAAATGAACCTGAGAATCCCCCTTACTCCAAT
AAAAATGGCTAATATCAATAACTCAAGGGACTACACATGCTGGCTAGAAT
GTTGAACAAAGGGAAACCAACCTTCCATGCTGGGGAGAATATGAAAAGGC
ACCACCCCGGAAAACAGAAGTCAAATCCTTTTTCCCTTCATATCCCCCTA
CTCTCN
TTTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGTACC
CCATTTTTAATTGGGGTTATTCCGTTCTCTGAAGACACCAAACCCAGACA
CTATTGCTGATGCCAAGAAGCTCTTGCTGACAGACTGGTATAGCTGTCCC
CTGTGAGACTCTACCGGAGACTGACCAATACAGAGGCAGAATGGTNNTTA
CAGNCNCAAACCCANNTCAAGAACTAAGCACAGGTACCTTCCAATGGGGG
GGAAAAAGGAATTTGGAGAGGCGCGTCCAACAAAAGGGGGGGTTTCCTCC
CCCCCCTGAGAAAAAAAAAAAAAAATTTTTTTTTTACCTAGAAAAACCCC
CCCCCAAATAAAAAACCACCCCCCCTCCACATTTTTTTTTCCGCGGTGGC
GGTTAACCTAAGGCCCCCCCCCTTTATTTTTTTNCCCCGTCTTNCCACCC
CCAGCCCCATTTTTCACCCCGTCTTTAACCTCCCATTAGCTCTTACATCC
CCANNNNNNATANNNNNNNNNNNNNNNNNNCCCCTNNTCTTTNNNNNNNN
TTTTTTANNNNNNCCCCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGAGACANNNNNNNGCNNNNNNAAAANNNNNAGNNNNNNNNNATA
TTAACCNGGGCCCCAGTTTATTNNNNGAAGNNNNNNAGNTAGCTTGGGGN
CCCTTCNCACGTCCCATCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_n01.b1 MSMg01no377_n01.b1 CHROMAT_FILE:
MSMg01no377_n01.b1 PHD_FILE: MSMg01no377_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:08 2005
         (497 letters)



>mm_chr17_21070064_21070960
          Length = 897

 Score =  897 bits (464), Expect = 0.0
 Identities = 490/508 (96%), Gaps = 15/508 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaatacaccctgaagtgagagcactattcctattgccaagttcctggacccca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gaattccaaatacaccctgaagtgagagcactattcctattgccaagttcctggacccca 526

                                                                       
Query: 65  ttttgtcatccatcacttttctgtttaagtcatttaa---------------aaaacaaa 109
           |||||||||||||||||||||||||||||||||||||               ||||||||
Sbjct: 525 ttttgtcatccatcacttttctgtttaagtcatttaaaaaacaaaacaaaacaaaacaaa 466

                                                                       
Query: 110 acaaaacaaaacaaacaaacatgcttcaataaaacctttcactgaacattcccaaacttg 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 acaaaacaaaacaaacaaacatgcttcaataaaacctttcactgaacattcccaaacttg 406

                                                                       
Query: 170 aatatgtatgtgagagattgcaaaactatagtctgcagcatagcaagactgtttcagagc 229
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 405 aatatgtatgtgagagattgcaaaactatagtctgcagcatagcaagactatttcagagc 346

                                                                       
Query: 230 aaacaattttgtcatcattaataactttcagtgagtctttatatatttctgatattagcc 289
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaacaattttatcatcattaataactttcagtgagtctttatatatttctgatattagcc 286

                                                                       
Query: 290 atttgtcagatgtagcattagtgaagatcttttcctaatctgtatattgccatttggtcc 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atttgtcagatgtagcattagtgaagatcttttcctaatctgtatattgccatttggtcc 226

                                                                       
Query: 350 tattgacagtattttttgtcttacagaagcattttagttttcaaattaaataacccaatt 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tattgacagtattttttgtcttacagaagcattttagttttcaaattaaataacccaatt 166

                                                                       
Query: 410 aaaatggggtatagagataaacagaaaattcttaacaagaggaattgcatgtggttaaga 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 aaaatggggtatagagataaacagaaaattcttaacaagaggaattgcatgtggttaaga 106

                                       
Query: 470 ctcacctaaagaaatgttcaatatcctt 497
           | ||||||||||||||||||||||||||
Sbjct: 105 cacacctaaagaaatgttcaatatcctt 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)