Query= MSMg01no377_p20.b1 MSMg01no377_p20.b1 CHROMAT_FILE:
MSMg01no377_p20.b1 PHD_FILE: MSMg01no377_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:22 2005
(488 letters)
>mm_chr17_46425332_46426220
Length = 889
Score = 830 bits (429), Expect = 0.0
Identities = 472/487 (96%), Gaps = 6/487 (1%)
Strand = Plus / Minus
Query: 4 ggaattctctgtagatcacgttggccttgaactcagaaatctgcctgcctctgcctccca 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ggaattctctgtagaccaggttggccttgaactcagaaatctgcctgcctctgcctccca 476
Query: 64 agtgctaggattaaaggcgtgcgtgcgccaccatgcccagctgtcactcatccattcttg 123
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 475 agtgctaggattaaaggcgtgcgtgcgccaccacgcccagctgtcactcatccattcttg 416
Query: 124 cttgcatttttcctctttggctgccagagtcttacgtgatgatagattctgtaggtagga 183
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 415 tttgcatttttcctctttggctgccagagtcttaggtgatgatagattctgtaggtagga 356
Query: 184 acagagaggaaa-ccccgctcagtgccagatgcaccaatgagtattacttat-gtattta 241
|||||||||||| ||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct: 355 acagagaggaaacccccgctcagtgccagatgcaccaatgagtattactt-tcgt-ttta 298
Query: 242 tttcggaggctaaatcctatgcaatcctggctgacctccaacaggcaatgtagttgaggg 301
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 297 tttcggaggctaaatcctatgcaatcctggctgacctcca--aggcaatgtagttgagga 240
Query: 302 taactgagcttctgagctcctgcctctgctttccgagtactgagatgagattacagacat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 taactgagcttctgagctcctgcctctgctttccgagtactgagatgagattacagacat 180
Query: 362 ttgtcaccatgcctggtttgcttatgcaggctgggcttgaacacagtgccttgtgcctgc 421
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 179 ttgtcaccgtgcctagtttgcttatgcaggctgggcttgaacacagtgcctcgtgcctgc 120
Query: 422 taagtaagcactctaccaaatgaaccacgcctctagcttttatttacacccggcaacacg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 taagtaagcactctaccaaatgaaccacgcctctagcttttatttacacccggcaacacg 60
Query: 482 cacaggc 488
|||||||
Sbjct: 59 cacaggc 53
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space: 420162
Effective search space used: 420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_p20.g1 MSMg01no377_p20.g1 CHROMAT_FILE:
MSMg01no377_p20.g1 PHD_FILE: MSMg01no377_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:22 2005
(302 letters)
>mm_chr17_46249964_46250665
Length = 702
Score = 530 bits (274), Expect = e-155
Identities = 296/304 (97%), Gaps = 2/304 (0%)
Strand = Plus / Plus
Query: 1 ttggaattgagaagcaaagagacttcatgaggaccaagtaccagtgttgttgctataaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttggaattgagaagcaaagagacttcatgaggaccaagtaccagtgttgtttttataaac 260
Query: 61 tttcagtctagggtactgtttctcagtcaggggtggacctctattccccactctcactcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcagtctagggtactgtttctcagtcaggggtggacctctattccccactctcactcc 320
Query: 121 taaaacatttggcagtgtctagaaacattttttggttgtcagaactggtagtagcaatac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 taaaacatttggcagtgtctagaaacattttttggttgtcagaactggtagtagcagtac 380
Query: 181 ctggtaagtggatagggataccattaaatgtcttacaacacacatgacaacacgacaaag 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtaagtggataggaataccattaaatgtcttacaacacacatgacaacacgacaaag 440
Query: 241 gatcatctgggtcacacacactca--tacacacacactagggtcgggatatggtggggtt 298
|| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 441 gaccatctgggtcacacacacacacatacacacacactagggtcgggatatggtggggtt 500
Query: 299 tgat 302
||||
Sbjct: 501 tgat 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
