BAC Information

Click to search

BAC

Clone NameMSMg01-378E16
Chromosome17 (Build37)
Map Location 10,394,248 - 10,394,735
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667170, LOC666143, 4932702K14Rik
Downstream geneQk, LOC675815, Pacrg, Park2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378E16.T7 (MSMg01no378_e16.b1)MSMg01-378E16.TJ (MSMg01no378_e16.g1)
ACCAG483172AG483173
length765789
length of high quality
(start - end)		488 (74 - 561)460 (81 - 540)
definitionCHROMAT_FILE: MSMg01no378_e16.b1 PHD_FILE: MSMg01no378_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:45 2005CHROMAT_FILE: MSMg01no378_e16.g1 PHD_FILE: MSMg01no378_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGATTTCCCAGTGGCATAGCTTTACTAATCAGGATTCTGC
ACATCACCTTAAGAAGAGCCATTTGTTTATATTGAAGCTTTCATCTGGAA
ATACAGCCCAGCCTGTGCATTTTCAAAGTTCTCCTGTGGAGTGACTTTCT
CCACACAAGTGAGGTTACAACTGAAACAAATGGAGCCCCAGTCTAAACCT
ATGGCTCAGGTGACCCAACATTTATAGAAACAAATAAGGCACACTAATAC
TTCATTCACTAAAGATTGTGAAAAATCACAACTGGTTTGAGGTGATAAAC
TTAATGCTCAGAAGTTTACTATTGAATGTGTGACTGACTGTGTGTGTCTT
CAAATGTCTTTGAGTTCCAAGAGAGTCCCACTTTTTTTTTTTAAGATTTA
TTTATTATTATATCTAAGTACACTGTAGCTGTCTTCAGACACACAAGAAG
GGCTTCAGATCTCTTTACGGATAGTTGCGAGCCACCATGTGGTTGCTGGG
ATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTACTCTTAACTGCTGAG
CCATCTCTCCAGNGGCCCACCACCACCACCACCACCATTGTTTTTGAACC
AACAAAAAAATTTTGTTCTGAATAAGTTCCATGAAAACCCCTTAGAAATT
TAAAGGGAATCCCACAAGAATCAATGAATTGACTGTAATCCAAACTGGAA
AAACCCCCCTGGAAG

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCCAGGTCCATATGAA
AAGAGGAAACTAACTTCCCAAAGCTGTCCCACAAATGTACTGTACCTGCA
TCACACACGCATACATACATACACACACAGACACACACATAGGCACACAG
ACACCACACATACACACATTTAGGCACATACACACACATAGACAGATACA
CACACACAGACACACATACATACACACACAGTCACACACATACATACACA
CAAATATAGACACAGACACACAAATACATACATACACATAGACAGATACA
CACATATAGACACATATAGACACAGATACACAGAGAGACATACATAGACA
CACACATACACACAGACACAAATAGACACACACACACACACACACACACA
CACACACACACGCTTTCCTATAAACATGGAAAACTAGTAAACTAGTATAG
TGTACATAAAGACGAGTGATTGACCCAATACATCTCTTAGCTGAAATGTA
GTTAAACCATGCAGAAATTGGGAAAAATTTATGAATATACTGGAATTTTT
TTTCAAAAAAAAATTGAATTTTCACAAGTATTTTGGAAAAAAACTTTTTT
GAAACCTAAGAAATTGGCTTGAAAAAAACTTTTTTTGAACCCTATCAAAG
GTTAAGCCCCGGGAAGTTAAGGGCCTGTTGTCCATCCTAAAAATTTGGGG
GGTAAAAAGAAAGGACCCCTGGTTTCCGCGCCAACACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_e16.b1 MSMg01no378_e16.b1 CHROMAT_FILE:
MSMg01no378_e16.b1 PHD_FILE: MSMg01no378_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:45 2005
         (488 letters)



>mm_chr17_10394178_10395065
          Length = 888

 Score =  920 bits (476), Expect = 0.0
 Identities = 485/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatagctttactaatcaggattctgcacatcaccttaagaagagccatttgtttatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 558 gcatagctttactaatcaggattctgcacatcaccttaagaagagctgtttgtttatatt 499

                                                                       
Query: 61  gaagctttcatctggaaatacagcccagcctgtgcattttcaaagttctcctgtggagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaagctttcatctggaaatacagcccagcctgtgcattttcaaagttctcctgtggagtg 439

                                                                       
Query: 121 actttctccacacaagtgaggttacaactgaaacaaatggagccccagtctaaacctatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 actttctccacacaagtgaggttacaactgaaacaaatggagccccagtctaaacctatg 379

                                                                       
Query: 181 gctcaggtgacccaacatttatagaaacaaataaggcacactaatacttcattcactaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gctcaggtgacccaacatttatagaaacaaataaggcacactaatacttcattcactaaa 319

                                                                       
Query: 241 gattgtgaaaaatcacaactggtttgaggtgataaacttaatgctcagaagtttactatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gattgtgaaaaatcacaactggtttgaggtgataaacttaatgctcagaagtttactatt 259

                                                                       
Query: 301 gaatgtgtgactgactgtgtgtgtcttcaaatgtctttgagttccaagagagtcccactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gaatgtgtgactgactgtgtgtgtcttcaaatgtctttgagttccaagagagtcccactt 199

                                                                       
Query: 361 tttttttttaagatttatttattattatatctaagtacactgtagctgtcttcagacaca 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttttttttaaagatttatttattattatatctaagtacactgtagctgtcttcagacaca 139

                                                                       
Query: 421 caagaagggcttcagatctctttacggatagttgcgagccaccatgtggttgctgggatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 caagaagggcttcagatctctttacggatagttgcgagccaccatgtggttgctgggatt 79

                   
Query: 481 tgaactca 488
           ||||||||
Sbjct: 78  tgaactca 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |