BAC Information

Click to search

BAC

Clone NameMSMg01-378H06
Chromosome17 (Build37)
Map Location 46,955,667 - 46,956,146
singlet/doubletsinglet
Overlap geneBC032203
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1
Downstream geneA330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378H06.T7 (MSMg01no378_h06.b1)MSMg01-378H06.TJ (MSMg01no378_h06.g1)
ACCAG483296AG483297
length756779
length of high quality
(start - end)
489 (47 - 535)341 (83 - 423)
definitionCHROMAT_FILE: MSMg01no378_h06.b1 PHD_FILE: MSMg01no378_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:57 2005CHROMAT_FILE: MSMg01no378_h06.g1 PHD_FILE: MSMg01no378_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCTGGGTGATACTCTACTGTAAAGTGCATGAATGTCTTGACT
CACAGAAATCGGCATTATCTGGCTTGGCATTAACTCTCTTGGTGGGGCGG
TAACAACATGAAATGTCATGAAGCCCCTCTTCTCGGGAGATGCTGAAGAA
GTTACAGGCAAACAGTCGGAGTGTTTATAAAGGACTTTGAAATGTGTTTG
TTCTTGAGCACACCACACAGGCACACATGGACCCTTAGTACAAGTAACAT
AGATACTGCAGAATCTAGGCTATGGGGGACAGACACCAGGCGAGCAGTTT
TCTGTCCCCCTTCAGTTTCCATGGCTCCGAGTCTCAGACTGAGCCCAGGC
TCCAGGGGACACTGTAAGCAAGCGGTGGCTGGAGAGCAGGGGGTAAACTT
CCTGCTCTCGGTGAGTGCTTGAGGCAGAGCTGACTAACTACCCACCCTGA
ACGCAACGTCTAGAAATGCAGTCCTCATGAATGTTAACAGCTAAAAATAG
ATTACTATGTGTGTGTGTGCACATCTGTGCATGTGTGCGAGTGTGCACGT
GTATGCCCGTATTGCTGTGTGCGTGCATGTGTGGAGGTATGAAGAACACC
TTGTGGGACTAGATCCTTCCCTTCCTTTCCTTGGCATAAGATTTTTTTGT
ATCTAATTTAGTCCATATTTTCCTCTCTATGTTTCATTGTATAACCCTTT
CTCTTC
TCCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGCTGGGTGCAGTGG
CACCTACCTTTAATCCCAGCAAGAGGCAGAAGTAGGAGGAGCTCTGAGTT
AGGGGGAGGGTGCATTCTGAAATATTGCTTGTACAGCTGGGTGACCGTGT
TCTTAGGAATAATTAAGATGATGATAAGTTGCATGGTTTTTAAAGTTGAC
ACACATCTGTGCAGTGATCTGAACTTTGTAAGTAAATAATGTAAGTCTTT
TAAGAAACCAAAGGCAGAAAGCAAGGTTACTTGAGCATTTAAGCTTTTTA
TGAGTGTCACTCTGGGTTTTCAAATACATGGCCAAAGGCAGTGGTGACTC
ACAAGGTGGGGTCTCTCACTGTTGCCTCTGAATCTTTAGATTTGTCTAGA
TCATAACCTGAATCAGTAAATTAAAAAAAAAAAATAAGTGCTTTGTGGTT
GTACTAATAATGCTGCCGTCTTTCTGCCTTCTTAATCAGTGTTTTTATTC
CGTCTCCTCTCCCCCCTGTTTTCTTTTACAAGAACATCCTTTTACCGCCC
TTTTCCTCTCCAAGCCCTGTGTATTGTTCTTCTTCGTGCCTGTTCTTTTA
ATACCCCGTTCTTTAAAGCCTTGTTCCCTCTCCTGCCTCCTTTTTCCCCC
CCCCCCTGTTTTCCTTTTTTCCCCCGCCCCCCTCCTCCTTCCCTTTTTTT
TTTCCCTTTCCCTCCCCTTCTCTTACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_h06.b1 MSMg01no378_h06.b1 CHROMAT_FILE:
MSMg01no378_h06.b1 PHD_FILE: MSMg01no378_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:57 2005
         (489 letters)



>mm_chr17_46955459_46956346
          Length = 888

 Score =  777 bits (402), Expect = 0.0
 Identities = 462/482 (95%), Gaps = 3/482 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattctgggtgatactctactgtaaagtgcatgaatgtcttgactcacagaaatcggca 68
           ||||||||||||| | |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 209 gaattctgggtgaaaatctactgtaaagtgcacgaatgtcttga-tcacagaaatcggca 267

                                                                       
Query: 69  ttatctggcttggcattaactctcttggtggggcggtaacaacatgaaatgtcatgaagc 128
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 268 ttatctggcttggcattaactctcttggtggggcggtaacaacatgaaatgtcaggaagc 327

                                                                       
Query: 129 ccctcttctcgggagatgctgaagaagttacaggcaaacagtcggagtgtttataaagga 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ccctcttctcgggagatgctgaagaagttacaggcaaacagtcggagtgtttataaagga 387

                                                                       
Query: 189 ctttgaaatgtgtttgttcttgagcacaccacacaggcacacatggacccttagtacaag 248
           ||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| ||
Sbjct: 388 ctttgaaatgtgtttgttcttgagcacactacatagacacacatggacccttagtacgag 447

                                                                       
Query: 249 taacatagatactgcagaatctaggctatgggggacagacaccaggcgagcagttttctg 308
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 448 taacacagatactgcagaatctaggctatgggagacagacaccaggcgagcagttttctg 507

                                                                       
Query: 309 tcccccttcagtttccatggctccgagtctcagactgagcccaggctccaggggacactg 368
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 508 tcccctttcagtttccatggctccgagtctcagactgagcccaggctccaggggtcactg 567

                                                                       
Query: 369 taagcaagcggtggctggagagcagggggtaaacttcctgctctcggtgagtgcttgagg 428
           ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 568 taagcaagcagtggctggagagcagggggtaaacttcctgctctctgtgagtgcttgggg 627

                                                                       
Query: 429 cagagctgactaactacccaccctgaacgcaacgtctagaaatgcagtcctc-atgaatg 487
           |||||||||||||||||||||||||||||||||| | ||||||||||||||| | |||||
Sbjct: 628 cagagctgactaactacccaccctgaacgcaacgccaagaaatgcagtcctcga-gaatg 686

             
Query: 488 tt 489
           ||
Sbjct: 687 tt 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space:   420562
Effective search space used:   420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)