Query= MSMg01no378_i10.b1 MSMg01no378_i10.b1 CHROMAT_FILE:
MSMg01no378_i10.b1 PHD_FILE: MSMg01no378_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:02 2005
(482 letters)
>mm_chr17_28456588_28457469
Length = 882
Score = 698 bits (361), Expect = 0.0
Identities = 389/405 (96%), Gaps = 12/405 (2%)
Strand = Plus / Minus
Query: 2 gcctcactgagatttgacacacgaaccatcaagcctggctctaagcagcatctctagtct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gcctcactgagatttgacacacgaaccatcaagcctggctctaagcagcatctctagtct 340
Query: 62 atgtctggctgtgggatctttttactattcatttcagctgcactcatccagggtccacca 121
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 339 atgtctggctgtgggatcttttttctattcatttcagctgcactcatccagggtccacca 280
Query: 122 tgtggactcagtccaccgttagttacccagcgagtcatctcttcagcctgattttttgtt 181
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 279 tgtggactcagtccaccgttagttacccagcgagtcatctcttcagcctaactttttgtt 220
Query: 182 ttgtttgtttttaagatttttattctttttgattatgtgcagttgtgtgtgtgtcaccta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttgtttgtttttaagatttttattctttttgattatgtgcagttgtgtgtgtgtcaccta 160
Query: 242 agttcaggta------ttttttaaggcaacgagtgtcagaggccttggagctaaagttac 295
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 159 agttcaggtaaccagg------aaggcaacgagtgtcagaggccttggagctaaagttac 106
Query: 296 aagcagctgtgagccacctgacgtgggtgctgggaagcaaacttggctcttctgtaagga 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 aagcagctgtgagccacctgacgtgggtgctgggaagcaaacttggctcttctgtaagga 46
Query: 356 cagcatacacttttttctttttttttaaagatttatttataatat 400
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 45 cagcatactcttttttctttttttttaaagatttatttataatat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_i10.g1 MSMg01no378_i10.g1 CHROMAT_FILE:
MSMg01no378_i10.g1 PHD_FILE: MSMg01no378_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:02 2005
(240 letters)
>mm_chr17_28285092_28285731
Length = 640
Score = 433 bits (224), Expect = e-126
Identities = 236/240 (98%)
Strand = Plus / Plus
Query: 1 gggggccctcacggtcacatgaggtgctttacccagtgagctttctgctcctcagaataa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggggccttcacggtcacatgaggtgctttacccagtgagctttctgctcctcagaataa 260
Query: 61 actccctaggacacccctgttcccagaatgccaaatggtcaaaggagagtagagaggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 actccctaggacacccctgttcccagaatgccaaatggtcaaaggagagtaaagaggcag 320
Query: 121 gcttcttctctggtgtatcccgcaggtagctgccatctgtttaacagatgccctcatagc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gcttcttctctggtgtatcccgcaggtagctgccatctgtttaacagatgccctcagagc 380
Query: 181 tccttcattacatggttactctgtcccactcacaagggagcccacagccccggcacagtg 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tccttcattacatggttactctgtcccactcacaagggagcccacagccctggcacagtg 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
